Installation from source on MacOS - galacticusorg/galacticus GitHub Wiki

Note that these installation instructions are still in beta-testing. Please report failures on the discussion forums.

A beta-release of an installation script (that automates the process of installing Galacticus from source) for MacOS is available in the installationScripts repo. You can find instructions for using this script here.

Install Xcode Command Line Tools

If you don't already have the Xcode command line tools installed, install them now:

if [[ ! $(xcode-select -p) ]]; then
    xcode-select --install
fi
export PATH=$PATH:/opt/local/bin:/usr/local/bin

Install MacPorts

Download the appropriate MacPorts for your system. The following will detect your OS version and download and install the correct version.

os_ver=$(sw_vers -productVersion)
IFS='.' read -r -a ver <<< "$os_ver"
if [[ "${ver}" -eq 11 ]]; then
    macportsversion=2.7.1
    macportsbase=2.7.1-11-BigSur
elif [[ "${ver}" -eq 12 ]]; then
    macportsversion=2.9.1
    macportsbase=2.9.1-12-Monterey
elif [[ "${ver}" -eq 13 ]]; then
    macportsversion=2.9.1
    macportsbase=2.9.1-13-Ventura
elif [[ "${ver}" -eq 14 ]]; then
    macportsversion=2.9.1
    macportsbase=2.9.1-14-Sonoma
else
    echo Unknown MacOS version: ${os_ver}
    exit 1
fi
curl -L https://github.com/macports/macports-base/releases/download/v${macportsversion}/MacPorts-${macportsbase}.pkg --output MacPorts-${macportsbase}.pkg
sudo installer -pkg ./MacPorts-${macportsbase}.pkg -target /
rm ./MacPorts-${macportsbase}.pkg

Install GCC

A recent GCC is required to build Galacticus. The following will install version 12 with an -mp-12 suffix on the executables to avoid possible conflict with other installations of GCC on your system.

sudo port install gcc12

Install Guile

sudo port install guile18

Install GSL

sudo port install gsl

Install libmatheval 

curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz
tar xvfz libmatheval-1.1.12.tar.gz
cd libmatheval-1.1.12
sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in
sed -E -i~ s/"-lguile"/"-lguile18"/ configure
sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c
CC=gcc-mp-12 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local
make -j
sudo make install
cd ..
rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12

Install QHull

curl -L http://www.qhull.org/download/qhull-2020-src-8.0.2.tgz --output qhull-2020-src-8.0.2.tgz
tar xvfz qhull-2020-src-8.0.2.tgz
cd qhull-2020.2
make -j CC=gcc-mp-12 CXX=g++-mp-12
sudo make install
cd ..
rm -rf qhull-2020-src-8.0.2.tgz qhull-2020.2

Install HDF5

curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz
tar -vxzf hdf5-1.8.20.tar.gz 
cd hdf5-1.8.20 
sed -E -i~ 's/^(# *include +<limits\.h>.*)$/\1\n#include <sys\/syslimits.h>\n/' src/H5private.h src/H5public.h
if   [[ "${ver}" -eq 13 ]]; then
    HDF5LDFLAGS="$LDFLAGS -Wl,-ld_classic"
elif [[ "${ver}" -eq 14 ]]; then
    HDF5CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk/usr/include
    mkdir sys
    cp /Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/sys/cdefs.h sys/
    sed -E -i~ s/"clang::"/"clang"/ sys/cdefs.h
    HDF5CFLAGS="-I`pwd` ${HDF5CFLAGS}"
fi
CC=gcc-mp-12 CXX=g++-mp-12 FC=gfortran-mp-12 CFLAGS=${HDF5CFLAGS} LDFLAGS=${HDF5LDFLAGS} ./configure --prefix=/usr/local --enable-fortran --enable-production 
make -j
sudo make install
cd ..
rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz

Install FoX

curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz
tar xvfz FoX-4.1.0.tar.gz
cd fox-4.1.0
FC=gfortran-mp-12 ./configure --prefix=/usr/local
make -j
sudo make install
cd ..
rm -rf fox-4.1.0 FoX-4.1.0.tar.gz

Install FFTW3

curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz
tar xvfz fftw-3.3.4.tar.gz
cd fftw-3.3.4
F77=gfortran-mp-12 CC=gcc-mp-12 ./configure --prefix=/usr/local
make -j
sudo make install
cd ..
rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz

Install ANN

curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz
tar xvfz ann_1.1.2.tar.gz
cd ann_1.1.2
sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-mp\-12"/ Make-config   
make macosx-g++
sudo cp bin/* /usr/local/bin/.
sudo cp lib/* /usr/local/lib/.
sudo cp -R include/* /usr/local/include/.

Install CPAN

During this, and all subsequent Perl module installs, accept all defaults (you can just press enter at each prompt):

sudo perl -MCPAN -e shell
sudo perl -MCPAN  -e 'install Bundle::CPAN'

Install various Perl modules

First, install CPAN:

if [[ "${ver}" -ge 14 ]]; then
    sudo port install openssl11
    export OPENSSL_PREFIX=/opt/local/libexec/openssl11
fi
curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz
tar xvfz Net-SSLeay-1.90.tar.gz
cd Net-SSLeay-1.90
perl Makefile.PL
make -j
sudo make install
cd ..
rm -rf Net-SSLeay-1.90.tar.gz Net-SSLeay-1.90
curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz
tar xvfz IO-Socket-SSL-1.966.tar.gz
cd IO-Socket-SSL-1.966
perl Makefile.PL
make -j
sudo make install
cd ..
rm -rf IO-Socket-SSL-1.966.tar.gz IO-Socket-SSL-1.966
curl -L https://cpan.metacpan.org/authors/id/M/MK/MKODERER/Sys-CPU-0.52.tar.gz --output Sys-CPU-0.52.tar.gz
tar xvfz Sys-CPU-0.52.tar.gz
cd Sys-CPU-0.52
perl Makefile.PL CCFLAGS=-Wno-error=implicit-function-declaration
make -j
sudo make install
cd ..
rm -rf Sys-CPU-0.52.tar.gz Sys-CPU-0.52
sudo perl -MCPAN -e 'install Bundle::CPAN'

Next install modules. If the command reports something like:

Can't locate object method "install" via package "Cwd" at -e line 1.

just ignore it - it means you already have the package installed.

if [[ "${ver}" -eq 14 ]]; then
    PERLCFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk/System/Library/Perl/5.30/darwin-thread-multi-2level/CORE perl -MCPAN -e 'force("install","Alien::Base::Wrapper")'
else
    PERLCFLAGS=
fi
sudo perl -MCPAN -e 'force("install","NestedMap")'
sudo perl -MCPAN -e 'force("install","Scalar::Util")'
sudo perl -MCPAN -e 'force("install","Term::ANSIColor")'
sudo perl -MCPAN -e 'force("install","Text::Table")'
sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")'
sudo perl -MCPAN -e 'force("install","Path::Tiny")'
sudo perl -MCPAN -e 'force("install","PkgConfig")'
sudo CFLAGS=${PERLCFLAGS} perl -MCPAN -e 'force("install","Alien::Base::Wrapper")'
sudo  perl -MCPAN -e 'force("install","Alien::Libxml2")'
sudo perl -MCPAN -e 'force("install","XML::LibXML::SAX")'
sudo perl -MCPAN -e 'force("install","XML::LibXML::SAX::Parser")'
if [[ "${ver}" -ge 12 ]]; then
    # For OS versions 12 and above we need to ensure that the ParserDetails.ini is set up.
    sudo perl -MXML::SAX -e "XML::SAX->add_parser('XML::SAX::PurePerl')->save_parsers()" || true
    sudo perl -MXML::SAX -e "XML::SAX->add_parser('XML::LibXML::SAX::Parser')->save_parsers()" 
    sudo perl -MXML::SAX -e "XML::SAX->add_parser('XML::LibXML::SAX')->save_parsers()" 
fi
sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")'
sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")'
sudo perl -MCPAN -e 'force("install","Text::Template")'
sudo perl -MCPAN -e 'force("install","List::Uniq")'
sudo perl -MCPAN -e 'force("install","IO::Util")'
sudo perl -MCPAN -e 'force("install","Class::Util")'
sudo perl -MCPAN -e 'force("install","CGI::Builder")'
sudo perl -MCPAN -e 'force("install","Simple")'
sudo perl -MCPAN -e 'force("install","Readonly")'
sudo perl -MCPAN -e 'force("install","File::Slurp")'
sudo perl -MCPAN -e 'force("install","XML::Simple")'
sudo CFLAGS=${PERLCFLAGS} perl -MCPAN -e 'force("install","List::MoreUtils")'
sudo perl -MCPAN -e 'force("install","Clone")'
sudo perl -MCPAN -e 'force("install","IO::Scalar")'
sudo perl -MCPAN -e 'force("install","Regexp::Common")'
sudo perl -MCPAN -e 'force("install","LaTeX::Encode")'
sudo perl -MCPAN -e 'force("install","Sub::Identify")'

Install Galacticus

git clone https://github.com/galacticusorg/galacticus.git
cd galacticus
export GALACTICUS_EXEC_PATH=`pwd`
export FCCOMPILER=gfortran-mp-12
export CCOMPILER=gcc-mp-12
export CPPCOMPILER=g++-mp-12
export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/finclude -L/usr/local/lib -L/opt/local/lib"
if [[ "${ver}" -eq 13 ]]; then
    export GALACTICUS_FCFLAGS="$GALACTICUS_FCFLAGS -Wl,-ld_classic"
fi
export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include"
export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include"
make -j Galacticus.exe

Finally

Follow the instructions to download run-time datasets used by Galacticus. You may want to set the above environment variable exports in your ~/.zhsenv so they are set automatically.

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