Home - fli-iam/shanoir-ng GitHub Wiki
Welcome to the Wiki of Shanoir‐NG !
- The Shanoir-NG Wiki is the first source of information.
- From this Wiki all additional informations will be linked.
Find general information and news on our website:
[!NOTE] Some additional documentations (mostly deprecated) can be found in /shanoir-ng/docs folder.
Users
User tutorial
Roles and rights
- Specification on roles and rights
- Specification on data user agreement (DUA)
- Specification on access by center limitation
Solr search/downloads
Study storage volume
Subject tags
ShanoirUploader
Virtual Imaging Platform (VIP)
Derived studies
Administration
Shanoir & ShanoirUploader Pseudonymization process
Operations (OPS): installation, updates and maintenance (administration)
What do I have to do to install Shanoir-NG on a new server?
Maintenance
Virtual Imaging Platform (VIP)
Developers (DEV)
Roadmap
Shanoir-NG-REST-API
- REST-Tutorial
- MS Studies Swagger doc
- MS Import Swagger doc
- MS Datasets Swagger doc
- MS Datasets Details
- MS Preclinical Swagger doc
DICOMWeb-REST-API
Viewers
Architecture (Macro + Micro)
Setup your development environment
Docker + Docker Compose
- Remote debugging with docker-compose
- Docker compose with Shanoir front on host-machine
- Build and run Shanoir front with docker-compose via volume sharing
- Installation of Bruker2Dicom, Dicom2Nifti docker image
- How redeploy a single container using docker-compose
Contributions
- Contributing to Shanoir
- Shanoir-NG Workflow based on forking workflow: The steps to follow is described by command lines and schemas in the google doc
- Contributors
Imports and exports
- Imports overview
- Imports architecture
- Import DICOM Process Steps
- Import DICOM ShanoirUploader
- Mass Import ShanoirUploader
- BIDS Specification
- MR Spectroscopy
- PT Specification
- Shanoir Exchange Format (SEF)
- Study Cards Specification
- Re-apply Study Cards Specification
- Develop a new import type
- Remove study cards from import
Security/Keycloak
DCM4CHEE (internal PACS of Shanoir-NG)
- DCM4CHEE GitHub page
- DICOM files storage
- DICOM files deletion
- Connect to web interface of dcm4chee archive 5
Angular frontend
Microservices
Testing
Qualif
We can redeploy on qualif:
- « build-shanoir-ng-new » pour reconstruire les images,
- et « reset-qualif-shanoir » pour relancer le déploiement (50 min)
- /var/log/dk/deploy-nightly-qualif.log
- /var/log/dk/qualif/dbdump-pre-migration.sql all databases before migration (as created by the ms)
- /var/log/dk/qualif/dbdump-post-migration.sql all databases after migration
- /var/log/dk/qualif/dbdump-prod-studies.sql production users db
- /var/log/dk/qualif/dbdump-prod-users.sql production studies db
- dk exec -t -i qualif-database mysql -uxxxx -pxxxx
- Logs: /var/log/dk/qualif/shanoir-ng
- https://shanoir-qualif.irisa.fr/auth/admin