x86_64 default spatial notebook 143c57fc9bca - fbnrst/sequencing-docker-stacks GitHub Wiki
- Build timestamp: 2025-04-21T04:09:43Z
- Docker image:
quay.io/fbnrst/spatial-notebook:143c57fc9bca - Docker image size: 9.83GB
- Git commit SHA: 143c57fc9bca2c61192a2932443857f1aad7db7e
- Git commit message:
Update README.md
Python 3.12.10
conda info:
active environment : None
user config file : /home/jovyan/.condarc
populated config files : /opt/conda/.condarc
/home/jovyan/.condarc
conda version : 25.3.1
conda-build version : not installed
python version : 3.12.10.final.0
solver : libmamba (default)
virtual packages : __archspec=1=zen2
__conda=25.3.1=0
__glibc=2.39=0
__linux=6.8.0=0
__unix=0=0
base environment : /opt/conda (writable)
conda av data dir : /opt/conda/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
package cache : /opt/conda/pkgs
/home/jovyan/.conda/pkgs
envs directories : /opt/conda/envs
/home/jovyan/.conda/envs
platform : linux-64
user-agent : conda/25.3.1 requests/2.32.3 CPython/3.12.10 Linux/6.8.0-1021-azure ubuntu/24.04.2 glibc/2.39 solver/libmamba conda-libmamba-solver/25.3.0 libmambapy/2.1.0
UID:GID : 1000:100
netrc file : None
offline mode : False
mamba info:
libmamba version : 2.1.0
mamba version : 2.1.0
curl version : libcurl/8.13.0 OpenSSL/3.5.0 zlib/1.3.1 zstd/1.5.7 libssh2/1.11.1 nghttp2/1.64.0
libarchive version : libarchive 3.7.7 zlib/1.3.1 liblzma/5.6.3 bz2lib/1.0.8 liblz4/1.10.0 libzstd/1.5.6
envs directories : /opt/conda/envs
package cache : /opt/conda/pkgs
/home/jovyan/.mamba/pkgs
environment : base
env location : /opt/conda
user config files : /home/jovyan/.mambarc
populated config files : /home/jovyan/.condarc
/opt/conda/.condarc
virtual packages : __unix=0=0
__linux=6.8.0=0
__glibc=2.39=0
__archspec=1=x86_64_v3
channels : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
base environment : /opt/conda
platform : linux-64
mamba list:
List of packages in environment: "/opt/conda"
Name Version Build Channel
────────────────────────────────────────────────────────────────────────────────────────────────
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annotated-types 0.7.0 pyhd8ed1ab_1 conda-forge
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array-api-compat 1.11.2 pyh29332c3_0 conda-forge
arrow 1.3.0 pyhd8ed1ab_1 conda-forge
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attr 2.5.1 h166bdaf_1 conda-forge
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bioconductor-metapod 1.10.0 r43hf17093f_3 bioconda
bioconductor-milor 1.10.0 r43hdfd78af_0 bioconda
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bioconductor-rbgl 1.78.0 r43hf17093f_1 bioconda
bioconductor-rhdf5 2.46.1 r43hf17093f_1 bioconda
bioconductor-rhdf5filters 1.14.1 r43hf17093f_1 bioconda
bioconductor-rhdf5lib 1.24.0 r43ha9d7317_2 bioconda
bioconductor-s4arrays 1.2.0 r43ha9d7317_2 bioconda
bioconductor-s4vectors 0.40.2 r43ha9d7317_2 bioconda
bioconductor-scaledmatrix 1.10.0 r43hdfd78af_0 bioconda
bioconductor-scater 1.30.1 r43hdfd78af_0 bioconda
bioconductor-scran 1.30.0 r43hf17093f_1 bioconda
bioconductor-scuttle 1.12.0 r43hf17093f_1 bioconda
bioconductor-singlecellexperiment 1.24.0 r43hdfd78af_0 bioconda
bioconductor-sparsearray 1.2.2 r43ha9d7317_2 bioconda
bioconductor-sparsematrixstats 1.14.0 r43hf17093f_1 bioconda
bioconductor-summarizedexperiment 1.32.0 r43hdfd78af_0 bioconda
bioconductor-xvector 0.42.0 r43ha9d7317_2 bioconda
bioconductor-zlibbioc 1.48.0 r43ha9d7317_2 bioconda
biopython 1.85 py312h66e93f0_1 conda-forge
blas 2.131 openblas conda-forge
blas-devel 3.9.0 31_h1ea3ea9_openblas conda-forge
bleach 6.2.0 pyh29332c3_4 conda-forge
bleach-with-css 6.2.0 h82add2a_4 conda-forge
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blosc 1.21.6 he440d0b_1 conda-forge
bokeh 3.7.2 pyhd8ed1ab_1 conda-forge
boltons 24.0.0 pyhd8ed1ab_1 conda-forge
bottleneck 1.4.2 py312hc0a28a1_0 conda-forge
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brotli 1.1.0 hb9d3cd8_2 conda-forge
brotli-bin 1.1.0 hb9d3cd8_2 conda-forge
brotli-python 1.1.0 py312h2ec8cdc_2 conda-forge
brunsli 0.1 h9c3ff4c_0 conda-forge
bwidget 1.10.1 ha770c72_0 conda-forge
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c-ares 1.34.5 hb9d3cd8_0 conda-forge
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ca-certificates 2025.1.31 hbcca054_0 conda-forge
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cachey 0.2.1 pyh9f0ad1d_0 conda-forge
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cellbender 0.3.0 pypi_0 pypi
cellrank 2.0.7 pyhd8ed1ab_0 conda-forge
celltypist 1.6.3 pyhdfd78af_0 bioconda
certifi 2025.1.31 pyhd8ed1ab_0 conda-forge
certipy 0.2.2 pyhd8ed1ab_0 conda-forge
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charls 2.4.2 h59595ed_0 conda-forge
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click 8.1.8 pyh707e725_0 conda-forge
click-default-group 1.2.4 pyhd8ed1ab_1 conda-forge
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comm 0.2.2 pyhd8ed1ab_1 conda-forge
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fastcluster 1.2.6 pypi_0 pypi
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fftw 3.3.10 mpi_openmpi_h99e62ba_10 conda-forge
filelock 3.18.0 pyhd8ed1ab_0 conda-forge
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fmt 11.1.4 h07f6e7f_1 conda-forge
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fontconfig 2.15.0 h7e30c49_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.57.0 py312h178313f_0 conda-forge
formulaic 1.1.1 pyhd8ed1ab_0 conda-forge
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fqdn 1.5.1 pyhd8ed1ab_1 conda-forge
freetype 2.13.3 h48d6fc4_0 conda-forge
freetype-py 2.5.1 pyhd8ed1ab_1 conda-forge
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fsspec 2025.3.2 pyhd8ed1ab_0 conda-forge
future 1.0.0 pyhd8ed1ab_2 conda-forge
gcc_impl_linux-64 14.2.0 hdb7739f_2 conda-forge
geopandas 1.0.1 pyhd8ed1ab_3 conda-forge
geopandas-base 1.0.1 pyha770c72_3 conda-forge
geos 3.13.1 h97f6797_0 conda-forge
geosketch 1.3 pyhdfd78af_0 bioconda
geotiff 1.7.4 h239500f_2 conda-forge
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gflags 2.2.2 h5888daf_1005 conda-forge
gfortran_impl_linux-64 14.2.0 h0ee6e4a_2 conda-forge
giflib 5.2.2 hd590300_0 conda-forge
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gsl 2.7 he838d99_0 conda-forge
gst-plugins-base 1.24.11 h651a532_0 conda-forge
gstreamer 1.24.11 hc37bda9_0 conda-forge
gxx_impl_linux-64 14.2.0 h2ead766_2 conda-forge
h11 0.14.0 pyhd8ed1ab_1 conda-forge
h2 4.2.0 pyhd8ed1ab_0 conda-forge
h5py 3.13.0 nompi_py312hedeef09_100 conda-forge
harfbuzz 11.0.1 h2c12942_0 conda-forge
harmonypy 0.0.10 pyhdfd78af_0 bioconda
hdf5 1.14.3 mpi_openmpi_h39ae36c_9 conda-forge
heapdict 1.0.1 pyhd8ed1ab_2 conda-forge
hnswlib 0.8.0 py312hc39e661_0 conda-forge
hpack 4.1.0 pyhd8ed1ab_0 conda-forge
hsluv 5.0.4 pyhd8ed1ab_1 conda-forge
httpcore 1.0.7 pyh29332c3_1 conda-forge
httpx 0.28.1 pyhd8ed1ab_0 conda-forge
humanize 4.12.2 pyhd8ed1ab_0 conda-forge
hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge
hypre 2.31.0 mpi_openmpi_h834c3d3_1 conda-forge
icu 75.1 he02047a_0 conda-forge
idna 3.10 pyhd8ed1ab_1 conda-forge
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importlib-metadata 8.6.1 pyha770c72_0 conda-forge
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in-n-out 0.2.1 pyhd8ed1ab_1 conda-forge
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interface_meta 1.3.0 pyhd8ed1ab_1 conda-forge
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ipykernel 6.29.5 pyh3099207_0 conda-forge
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ipython 9.1.0 pyhfb0248b_0 conda-forge
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ipywidgets 8.1.6 pyhd8ed1ab_0 conda-forge
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jsonschema-with-format-nongpl 4.23.0 hd8ed1ab_1 conda-forge
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jupyter_client 8.6.3 pyhd8ed1ab_1 conda-forge
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readfcs 1.1.8 pyhd8ed1ab_0 conda-forge
readline 8.2 h8c095d6_2 conda-forge
referencing 0.36.2 pyh29332c3_0 conda-forge
reproc 14.2.5.post0 hb9d3cd8_0 conda-forge
reproc-cpp 14.2.5.post0 h5888daf_0 conda-forge
requests 2.32.3 pyhd8ed1ab_1 conda-forge
requests_cache 0.4.13 py_0 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_1 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
rich 14.0.0 pyh29332c3_0 conda-forge
roman-numerals-py 3.1.0 pyhd8ed1ab_0 conda-forge
rpds-py 0.24.0 py312h3b7be25_0 conda-forge
rpy2 3.5.11 py312r43hc7c0aa3_3 conda-forge
ruamel.yaml 0.18.10 py312h66e93f0_0 conda-forge
ruamel.yaml.clib 0.2.8 py312h66e93f0_1 conda-forge
ruff 0.11.6 py312h286b59f_0 conda-forge
s2n 1.5.11 h072c03f_0 conda-forge
scalapack 2.2.0 h16fb9de_4 conda-forge
scanorama 1.7.4 pyhdfd78af_0 bioconda
scanpy 1.11.1 pyhd8ed1ab_0 conda-forge
scikit-image 0.25.2 py312hf9745cd_0 conda-forge
scikit-learn 1.5.2 py312h7a48858_1 conda-forge
scikit-misc 0.5.1 pypi_0 pypi
scipy 1.15.2 py312ha707e6e_0 conda-forge
scrublet 0.2.3 pyh5e36f6f_1 bioconda
scvelo 0.3.3 pyhd8ed1ab_0 conda-forge
scvi-tools 1.3.0 pyhd8ed1ab_0 conda-forge
seaborn 0.13.2 hd8ed1ab_3 conda-forge
seaborn-base 0.13.2 pyhd8ed1ab_3 conda-forge
sed 4.8 he412f7d_0 conda-forge
send2trash 1.8.3 pyh0d859eb_1 conda-forge
session-info 1.0.0 pyhd8ed1ab_0 conda-forge
session-info2 0.1.2 pyhd8ed1ab_0 conda-forge
setuptools 78.1.0 pyhff2d567_0 conda-forge
shapely 2.1.0 py312h21f5128_0 conda-forge
shellingham 1.5.4 pyhd8ed1ab_1 conda-forge
simdjson 3.12.3 h84d6215_0 conda-forge
simpervisor 1.0.0 pyhd8ed1ab_1 conda-forge
simplegeneric 0.8.1 pyhd8ed1ab_2 conda-forge
sip 6.8.6 py312h2ec8cdc_2 conda-forge
six 1.17.0 pyhd8ed1ab_0 conda-forge
sleef 3.8 h1b44611_0 conda-forge
slepc 3.21.2 real_h8d33f58_300 conda-forge
slepc4py 3.21.2 py312h85e2ebe_0 conda-forge
slicerator 1.1.0 pyhd8ed1ab_1 conda-forge
smmap 5.0.2 pyhd8ed1ab_0 conda-forge
snappy 1.2.1 h8bd8927_1 conda-forge
sniffio 1.3.1 pyhd8ed1ab_1 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_1 conda-forge
soupsieve 2.5 pyhd8ed1ab_1 conda-forge
sparse 0.16.0 pyh1646c32_0 conda-forge
spatial-image 1.1.0 pyhd8ed1ab_1 conda-forge
spatial_image 1.2.1 pypi_0 pypi
spatialdata 0.3.0 pyhd8ed1ab_0 conda-forge
spatialdata-io 0.1.7 pyhd8ed1ab_0 conda-forge
spatialdata-plot 0.2.9 pyhd8ed1ab_0 conda-forge
spdlog 1.15.2 h10b92b3_0 conda-forge
sphinx 8.2.3 pyhd8ed1ab_0 conda-forge
sphinxcontrib-applehelp 2.0.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-devhelp 2.0.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-htmlhelp 2.1.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_1 conda-forge
sphinxcontrib-qthelp 2.0.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-serializinghtml 1.1.10 pyhd8ed1ab_1 conda-forge
sqlalchemy 2.0.40 py312h66e93f0_0 conda-forge
sqlite 3.49.1 h9eae976_2 conda-forge
squidpy 1.6.5 pyhd8ed1ab_0 conda-forge
stack_data 0.6.3 pyhd8ed1ab_1 conda-forge
statsmodels 0.14.4 py312hc0a28a1_0 conda-forge
stdlib-list 0.11.1 pyhd8ed1ab_0 conda-forge
suitesparse 7.8.3 ss783_h36e971b conda-forge
superlu 7.0.0 h832b8c9_1 conda-forge
superlu_dist 9.1.0 h3349319_0 conda-forge
superqt 0.7.3 pyhb6d5dde_0 conda-forge
svt-av1 3.0.2 h5888daf_0 conda-forge
sympy 1.13.3 pyh2585a3b_105 conda-forge
sysroot_linux-64 2.17 h0157908_18 conda-forge
tabulate 0.9.0 pyhd8ed1ab_2 conda-forge
tapi 1300.6.5 h5888daf_0 conda-forge
tbb 2022.1.0 h4ce085d_0 conda-forge
tblib 3.1.0 pyhd8ed1ab_0 conda-forge
tensorboard 2.19.0 pyhd8ed1ab_0 conda-forge
tensorboard-data-server 0.7.0 py312hda17c39_2 conda-forge
tensorstore 0.1.65 py312h1b8c868_4 conda-forge
terminado 0.18.1 pyh0d859eb_0 conda-forge
texttable 1.7.0 pyhd8ed1ab_1 conda-forge
threadpoolctl 3.6.0 pyhecae5ae_0 conda-forge
tifffile 2025.3.30 pyhd8ed1ab_0 conda-forge
tinycss2 1.4.0 pyhd8ed1ab_0 conda-forge
tk 8.6.13 noxft_h4845f30_101 conda-forge
tktable 2.10 h8bc8fbc_6 conda-forge
toml 0.10.2 pyhd8ed1ab_1 conda-forge
tomli 2.2.1 pyhd8ed1ab_1 conda-forge
tomli-w 1.2.0 pyhd8ed1ab_0 conda-forge
tomlkit 0.13.2 pyha770c72_1 conda-forge
toolz 1.0.0 pyhd8ed1ab_1 conda-forge
toposort 1.10 pyhd8ed1ab_1 conda-forge
torchmetrics 1.7.1 pyhd8ed1ab_0 conda-forge
tornado 6.4.2 py312h66e93f0_0 conda-forge
tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
traitlets 5.14.3 pyhd8ed1ab_1 conda-forge
truststore 0.10.1 pyh29332c3_0 conda-forge
typeguard 4.4.2 pyhd8ed1ab_0 conda-forge
typer 0.15.2 pyhff008b6_0 conda-forge
typer-slim 0.15.2 pyh29332c3_0 conda-forge
typer-slim-standard 0.15.2 h801b22e_0 conda-forge
types-python-dateutil 2.9.0.20241206 pyhd8ed1ab_0 conda-forge
typing-extensions 4.13.2 h0e9735f_0 conda-forge
typing-inspection 0.4.0 pyhd8ed1ab_0 conda-forge
typing_extensions 4.13.2 pyh29332c3_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_1 conda-forge
tzdata 2025b h78e105d_0 conda-forge
tzlocal 5.3 py312h7900ff3_0 conda-forge
ucc 1.3.0 had72a48_5 conda-forge
ucx 1.18.0 hfd9a62f_3 conda-forge
umap-learn 0.5.7 py312h7900ff3_1 conda-forge
unicodedata2 16.0.0 py312h66e93f0_0 conda-forge
unixodbc 2.3.12 h661eb56_0 conda-forge
untokenize 0.1.1 pyhd8ed1ab_2 conda-forge
uri-template 1.3.0 pyhd8ed1ab_1 conda-forge
uriparser 0.9.8 hac33072_0 conda-forge
urllib3 2.4.0 pyhd8ed1ab_0 conda-forge
validators 0.34.0 pyhd8ed1ab_1 conda-forge
vispy 0.14.3 py312ha89f626_1 conda-forge
wcwidth 0.2.13 pyhd8ed1ab_1 conda-forge
webcolors 24.11.1 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_3 conda-forge
websocket-client 1.8.0 pyhd8ed1ab_1 conda-forge
werkzeug 3.1.3 pyhd8ed1ab_1 conda-forge
wheel 0.45.1 pyhd8ed1ab_1 conda-forge
widgetsnbextension 4.0.14 pyhd8ed1ab_0 conda-forge
wrapt 1.17.2 py312h66e93f0_0 conda-forge
xarray 2024.11.0 pyhd8ed1ab_0 conda-forge
xarray-dataclasses 1.9.1 pyhd8ed1ab_1 conda-forge
xarray-datatree 0.0.14 pyhd8ed1ab_0 conda-forge
xarray-schema 0.0.3 pyhd8ed1ab_0 conda-forge
xarray-spatial 0.4.0 pyhd8ed1ab_1 conda-forge
xcb-util 0.4.1 hb711507_2 conda-forge
xcb-util-image 0.4.0 hb711507_2 conda-forge
xcb-util-keysyms 0.4.1 hb711507_0 conda-forge
xcb-util-renderutil 0.3.10 hb711507_0 conda-forge
xcb-util-wm 0.4.2 hb711507_0 conda-forge
xerces-c 3.2.5 h988505b_2 conda-forge
xkeyboard-config 2.43 hb9d3cd8_0 conda-forge
xlrd 2.0.1 pyhd8ed1ab_3 conda-forge
xmltodict 0.14.2 pyhd8ed1ab_1 conda-forge
xorg-libice 1.1.2 hb9d3cd8_0 conda-forge
xorg-libsm 1.2.6 he73a12e_0 conda-forge
xorg-libx11 1.8.12 h4f16b4b_0 conda-forge
xorg-libxau 1.0.12 hb9d3cd8_0 conda-forge
xorg-libxdamage 1.1.6 hb9d3cd8_0 conda-forge
xorg-libxdmcp 1.1.5 hb9d3cd8_0 conda-forge
xorg-libxext 1.3.6 hb9d3cd8_0 conda-forge
xorg-libxfixes 6.0.1 hb9d3cd8_0 conda-forge
xorg-libxrender 0.9.12 hb9d3cd8_0 conda-forge
xorg-libxshmfence 1.3.3 hb9d3cd8_0 conda-forge
xorg-libxt 1.3.1 hb9d3cd8_0 conda-forge
xorg-libxxf86vm 1.1.6 hb9d3cd8_0 conda-forge
xsdata 24.3.1 pyhd8ed1ab_0 conda-forge
xyzservices 2025.1.0 pyhd8ed1ab_0 conda-forge
xz 5.8.1 hbcc6ac9_0 conda-forge
xz-gpl-tools 5.8.1 hbcc6ac9_0 conda-forge
xz-tools 5.8.1 hb9d3cd8_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
yaml-cpp 0.8.0 h59595ed_0 conda-forge
yarl 1.18.3 py312h178313f_1 conda-forge
yq 3.4.3 pyhd8ed1ab_1 conda-forge
zarr 2.18.7 pyhd8ed1ab_0 conda-forge
zeromq 4.3.5 h3b0a872_7 conda-forge
zfp 1.0.1 h5888daf_2 conda-forge
zict 3.0.0 pyhd8ed1ab_1 conda-forge
zipp 3.21.0 pyhd8ed1ab_1 conda-forge
zlib 1.3.1 hb9d3cd8_2 conda-forge
zlib-ng 2.2.4 h7955e40_0 conda-forge
zstandard 0.23.0 py312h66e93f0_1 conda-forge
zstd 1.5.7 hb8e6e7a_2 conda-forge
apt list --installed:
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Listing...
adduser/now 3.137ubuntu1 all [installed,local]
apt/now 2.7.14build2 amd64 [installed,local]
base-files/now 13ubuntu10.2 amd64 [installed,local]
base-passwd/now 3.6.3build1 amd64 [installed,local]
bash/now 5.2.21-2ubuntu4 amd64 [installed,local]
binutils-common/now 2.42-4ubuntu2.5 amd64 [installed,local]
binutils-x86-64-linux-gnu/now 2.42-4ubuntu2.5 amd64 [installed,local]
binutils/now 2.42-4ubuntu2.5 amd64 [installed,local]
bsdutils/now 1:2.39.3-9ubuntu6.2 amd64 [installed,local]
build-essential/now 12.10ubuntu1 amd64 [installed,local]
bzip2/now 1.0.8-5.1build0.1 amd64 [installed,local]
ca-certificates/now 20240203 all [installed,local]
cm-super-minimal/now 0.3.4-17 all [installed,local]
cm-super/now 0.3.4-17 all [installed,local]
coreutils/now 9.4-3ubuntu6 amd64 [installed,local]
cpp-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
cpp-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
cpp-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
cpp/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
curl/now 8.5.0-2ubuntu10.6 amd64 [installed,local]
dash/now 0.5.12-6ubuntu5 amd64 [installed,local]
debconf/now 1.5.86ubuntu1 all [installed,local]
debianutils/now 5.17build1 amd64 [installed,local]
diffutils/now 1:3.10-1build1 amd64 [installed,local]
dpkg-dev/now 1.22.6ubuntu6.1 all [installed,local]
dpkg/now 1.22.6ubuntu6.1 amd64 [installed,local]
dvipng/now 1.15-1.1 amd64 [installed,local]
e2fsprogs/now 1.47.0-2.4~exp1ubuntu4.1 amd64 [installed,local]
ffmpeg/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
findutils/now 4.9.0-5build1 amd64 [installed,local]
fontconfig-config/now 2.15.0-1.1ubuntu2 amd64 [installed,local]
fontconfig/now 2.15.0-1.1ubuntu2 amd64 [installed,local]
fonts-dejavu-core/now 2.37-8 all [installed,local]
fonts-dejavu-extra/now 2.37-8 all [installed,local]
fonts-dejavu-mono/now 2.37-8 all [installed,local]
fonts-dejavu/now 2.37-8 all [installed,local]
fonts-liberation/now 1:2.1.5-3 all [installed,local]
fonts-lmodern/now 2.005-1 all [installed,local]
fonts-urw-base35/now 20200910-8 all [installed,local]
g++-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
g++-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
g++-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
g++/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gcc-13-base/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gcc-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gcc-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gcc-14-base/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
gcc-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gcc/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gfortran-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gfortran-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gfortran-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gfortran/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
ghostscript/now 10.02.1~dfsg1-0ubuntu7.5 amd64 [installed,local]
git-man/now 1:2.43.0-1ubuntu7.2 all [installed,local]
git/now 1:2.43.0-1ubuntu7.2 amd64 [installed,local]
gpgv/now 2.4.4-2ubuntu17.2 amd64 [installed,local]
grep/now 3.11-4build1 amd64 [installed,local]
gzip/now 1.12-1ubuntu3 amd64 [installed,local]
hostname/now 3.23+nmu2ubuntu2 amd64 [installed,local]
init-system-helpers/now 1.66ubuntu1 all [installed,local]
less/now 590-2ubuntu2.1 amd64 [installed,local]
libacl1/now 2.3.2-1build1.1 amd64 [installed,local]
libaom3/now 3.8.2-2ubuntu0.1 amd64 [installed,local]
libapache-pom-java/now 29-2 all [installed,local]
libapparmor1/now 4.0.1really4.0.1-0ubuntu0.24.04.3 amd64 [installed,local]
libapt-pkg6.0t64/now 2.7.14build2 amd64 [installed,local]
libasan8/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libasound2-data/now 1.2.11-1build2 all [installed,local]
libasound2t64/now 1.2.11-1build2 amd64 [installed,local]
libass9/now 1:0.17.1-2build1 amd64 [installed,local]
libassuan0/now 2.5.6-1build1 amd64 [installed,local]
libasyncns0/now 0.8-6build4 amd64 [installed,local]
libatomic1/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libattr1/now 1:2.5.2-1build1.1 amd64 [installed,local]
libaudit-common/now 1:3.1.2-2.1build1.1 all [installed,local]
libaudit1/now 1:3.1.2-2.1build1.1 amd64 [installed,local]
libavahi-client3/now 0.8-13ubuntu6 amd64 [installed,local]
libavahi-common-data/now 0.8-13ubuntu6 amd64 [installed,local]
libavahi-common3/now 0.8-13ubuntu6 amd64 [installed,local]
libavc1394-0/now 0.5.4-5build3 amd64 [installed,local]
libavcodec60/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavdevice60/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavfilter9/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavformat60/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavutil58/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libbinutils/now 2.42-4ubuntu2.5 amd64 [installed,local]
libblas3/now 3.12.0-3build1.1 amd64 [installed,local]
libblkid1/now 2.39.3-9ubuntu6.2 amd64 [installed,local]
libbluray2/now 1:1.3.4-1build1 amd64 [installed,local]
libbrotli1/now 1.1.0-2build2 amd64 [installed,local]
libbs2b0/now 3.1.0+dfsg-7build1 amd64 [installed,local]
libbsd0/now 0.12.1-1build1.1 amd64 [installed,local]
libbz2-1.0/now 1.0.8-5.1build0.1 amd64 [installed,local]
libc-bin/now 2.39-0ubuntu8.4 amd64 [installed,local]
libc-dev-bin/now 2.39-0ubuntu8.4 amd64 [installed,local]
libc6-dev/now 2.39-0ubuntu8.4 amd64 [installed,local]
libc6/now 2.39-0ubuntu8.4 amd64 [installed,local]
libcaca0/now 0.99.beta20-4build2 amd64 [installed,local]
libcairo-gobject2/now 1.18.0-3build1 amd64 [installed,local]
libcairo2/now 1.18.0-3build1 amd64 [installed,local]
libcap-ng0/now 0.8.4-2build2 amd64 [installed,local]
libcap2/now 1:2.66-5ubuntu2.2 amd64 [installed,local]
libcbor0.10/now 0.10.2-1.2ubuntu2 amd64 [installed,local]
libcc1-0/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libcdio-cdda2t64/now 10.2+2.0.1-1.1build2 amd64 [installed,local]
libcdio-paranoia2t64/now 10.2+2.0.1-1.1build2 amd64 [installed,local]
libcdio19t64/now 2.1.0-4.1ubuntu1.2 amd64 [installed,local]
libchromaprint1/now 1.5.1-5 amd64 [installed,local]
libcjson1/now 1.7.17-1 amd64 [installed,local]
libcodec2-1.2/now 1.2.0-2build1 amd64 [installed,local]
libcom-err2/now 1.47.0-2.4~exp1ubuntu4.1 amd64 [installed,local]
libcommons-logging-java/now 1.3.0-1ubuntu1 all [installed,local]
libcommons-parent-java/now 56-1 all [installed,local]
libcrypt-dev/now 1:4.4.36-4build1 amd64 [installed,local]
libcrypt1/now 1:4.4.36-4build1 amd64 [installed,local]
libctf-nobfd0/now 2.42-4ubuntu2.5 amd64 [installed,local]
libctf0/now 2.42-4ubuntu2.5 amd64 [installed,local]
libcups2t64/now 2.4.7-1.2ubuntu7.3 amd64 [installed,local]
libcurl3t64-gnutls/now 8.5.0-2ubuntu10.6 amd64 [installed,local]
libcurl4t64/now 8.5.0-2ubuntu10.6 amd64 [installed,local]
libdatrie1/now 0.2.13-3build1 amd64 [installed,local]
libdav1d7/now 1.4.1-1build1 amd64 [installed,local]
libdb5.3t64/now 5.3.28+dfsg2-7 amd64 [installed,local]
libdbus-1-3/now 1.14.10-4ubuntu4.1 amd64 [installed,local]
libdc1394-25/now 2.2.6-4build1 amd64 [installed,local]
libde265-0/now 1.0.15-1build3 amd64 [installed,local]
libdebconfclient0/now 0.271ubuntu3 amd64 [installed,local]
libdecor-0-0/now 0.2.2-1build2 amd64 [installed,local]
libdeflate0/now 1.19-1build1.1 amd64 [installed,local]
libdpkg-perl/now 1.22.6ubuntu6.1 all [installed,local]
libdrm-amdgpu1/now 2.4.122-1~ubuntu0.24.04.1 amd64 [installed,local]
libdrm-common/now 2.4.122-1~ubuntu0.24.04.1 all [installed,local]
libdrm-intel1/now 2.4.122-1~ubuntu0.24.04.1 amd64 [installed,local]
libdrm-radeon1/now 2.4.122-1~ubuntu0.24.04.1 amd64 [installed,local]
libdrm2/now 2.4.122-1~ubuntu0.24.04.1 amd64 [installed,local]
libedit2/now 3.1-20230828-1build1 amd64 [installed,local]
libelf1t64/now 0.190-1.1ubuntu0.1 amd64 [installed,local]
liberror-perl/now 0.17029-2 all [installed,local]
libexpat1/now 2.6.1-2ubuntu0.3 amd64 [installed,local]
libext2fs2t64/now 1.47.0-2.4~exp1ubuntu4.1 amd64 [installed,local]
libffi8/now 3.4.6-1build1 amd64 [installed,local]
libfftw3-double3/now 3.3.10-1ubuntu3 amd64 [installed,local]
libfido2-1/now 1.14.0-1build3 amd64 [installed,local]
libflac12t64/now 1.4.3+ds-2.1ubuntu2 amd64 [installed,local]
libflite1/now 2.2-6build3 amd64 [installed,local]
libfontbox-java/now 1:1.8.16-5 all [installed,local]
libfontconfig1/now 2.15.0-1.1ubuntu2 amd64 [installed,local]
libfontenc1/now 1:1.1.8-1build1 amd64 [installed,local]
libfreetype6/now 2.13.2+dfsg-1build3 amd64 [installed,local]
libfribidi0/now 1.0.13-3build1 amd64 [installed,local]
libgbm1/now 24.2.8-1ubuntu1~24.04.1 amd64 [installed,local]
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ubuntu-keyring/now 2023.11.28.1 all [installed,local]
ucf/now 3.0043+nmu1 all [installed,local]
unminimize/now 0.2.1 amd64 [installed,local]
unzip/now 6.0-28ubuntu4.1 amd64 [installed,local]
util-linux/now 2.39.3-9ubuntu6.2 amd64 [installed,local]
vim-common/now 2:9.1.0016-1ubuntu7.8 all [installed,local]
vim-tiny/now 2:9.1.0016-1ubuntu7.8 amd64 [installed,local]
wget/now 1.21.4-1ubuntu4.1 amd64 [installed,local]
x11-common/now 1:7.7+23ubuntu3 all [installed,local]
xclip/now 0.13-3 amd64 [installed,local]
xdg-utils/now 1.1.3-4.1ubuntu3 all [installed,local]
xfonts-encodings/now 1:1.0.5-0ubuntu2 all [installed,local]
xfonts-utils/now 1:7.7+6build3 amd64 [installed,local]
xkb-data/now 2.41-2ubuntu1.1 all [installed,local]
xz-utils/now 5.6.1+really5.4.5-1ubuntu0.2 amd64 [installed,local]
zlib1g/now 1:1.3.dfsg-3.1ubuntu2.1 amd64 [installed,local]
R --version:
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-conda-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
R --silent -e 'installed.packages(.Library)[, c(1,3)]':
> installed.packages(.Library)[, c(1,3)]
Package Version
abind "abind" "1.4-5"
askpass "askpass" "1.2.1"
assertthat "assertthat" "0.2.1"
backports "backports" "1.5.0"
base "base" "4.3.3"
base64enc "base64enc" "0.1-3"
beachmat "beachmat" "2.18.0"
beeswarm "beeswarm" "0.4.0"
BH "BH" "1.87.0-1"
Biobase "Biobase" "2.62.0"
BiocGenerics "BiocGenerics" "0.48.1"
BiocIO "BiocIO" "1.12.0"
BiocManager "BiocManager" "1.30.25"
BiocNeighbors "BiocNeighbors" "1.20.0"
BiocParallel "BiocParallel" "1.36.0"
BiocSingular "BiocSingular" "1.18.0"
biocViews "biocViews" "1.70.0"
bit "bit" "4.6.0"
bit64 "bit64" "4.6.0-1"
bitops "bitops" "1.0-9"
blob "blob" "1.2.4"
bluster "bluster" "1.12.0"
boot "boot" "1.3-31"
brew "brew" "1.0-10"
brio "brio" "1.1.5"
broom "broom" "1.0.8"
broom.helpers "broom.helpers" "1.20.0"
bslib "bslib" "0.9.0"
cachem "cachem" "1.1.0"
Cairo "Cairo" "1.6-2"
callr "callr" "3.7.6"
car "car" "3.1-3"
carData "carData" "3.0-5"
cards "cards" "0.6.0"
caret "caret" "6.0-94"
caTools "caTools" "1.18.3"
cellranger "cellranger" "1.1.0"
circlize "circlize" "0.4.16"
class "class" "7.3-23"
cli "cli" "3.6.4"
clipr "clipr" "0.8.0"
clock "clock" "0.7.3"
clue "clue" "0.3-66"
cluster "cluster" "2.1.8.1"
codetools "codetools" "0.2-20"
collections "collections" "0.3.7"
colorspace "colorspace" "2.1-1"
combinat "combinat" "0.0-8"
commonmark "commonmark" "1.9.5"
compiler "compiler" "4.3.3"
ComplexHeatmap "ComplexHeatmap" "2.18.0"
conflicted "conflicted" "1.2.0"
conquer "conquer" "1.3.3"
corrplot "corrplot" "0.95"
cowplot "cowplot" "1.1.3"
cpp11 "cpp11" "0.5.2"
crayon "crayon" "1.5.3"
credentials "credentials" "2.0.2"
crosstalk "crosstalk" "1.2.1"
curl "curl" "6.2.2"
cyclocomp "cyclocomp" "1.1.1"
data.table "data.table" "1.17.0"
datasets "datasets" "4.3.3"
DBI "DBI" "1.2.3"
dbplyr "dbplyr" "2.5.0"
DDRTree "DDRTree" "0.1.5"
DelayedArray "DelayedArray" "0.28.0"
DelayedMatrixStats "DelayedMatrixStats" "1.24.0"
deldir "deldir" "2.0-4"
Deriv "Deriv" "4.1.6"
desc "desc" "1.4.3"
devtools "devtools" "2.4.5"
diagram "diagram" "1.6.5"
dials "dials" "1.4.0"
DiceDesign "DiceDesign" "1.10"
diffobj "diffobj" "0.3.5"
digest "digest" "0.6.37"
doBy "doBy" "4.6.26"
docopt "docopt" "0.7.2"
doFuture "doFuture" "1.0.2"
doParallel "doParallel" "1.0.17"
dotCall64 "dotCall64" "1.2"
downlit "downlit" "0.4.4"
dplyr "dplyr" "1.1.4"
dqrng "dqrng" "0.3.2"
dtplyr "dtplyr" "1.3.1"
e1071 "e1071" "1.7-16"
edgeR "edgeR" "4.0.16"
ellipsis "ellipsis" "0.3.2"
evaluate "evaluate" "1.0.3"
fansi "fansi" "1.0.6"
farver "farver" "2.1.2"
fastDummies "fastDummies" "1.7.5"
fastICA "fastICA" "1.2-7"
fastmap "fastmap" "1.2.0"
fitdistrplus "fitdistrplus" "1.2-2"
FNN "FNN" "1.1.4.1"
fontawesome "fontawesome" "0.5.3"
forcats "forcats" "1.0.0"
foreach "foreach" "1.5.2"
forecast "forecast" "8.24.0"
formatR "formatR" "1.14"
Formula "Formula" "1.2-5"
fracdiff "fracdiff" "1.5-3"
fs "fs" "1.6.6"
furrr "furrr" "0.3.1"
futile.logger "futile.logger" "1.4.3"
futile.options "futile.options" "1.0.1"
future "future" "1.40.0"
future.apply "future.apply" "1.11.3"
gargle "gargle" "1.5.2"
gbRd "gbRd" "0.4.12"
generics "generics" "0.1.3"
GenomeInfoDb "GenomeInfoDb" "1.38.1"
GenomeInfoDbData "GenomeInfoDbData" "1.2.11"
GenomicRanges "GenomicRanges" "1.54.1"
gert "gert" "2.1.4"
GetoptLong "GetoptLong" "1.0.5"
GGally "GGally" "2.2.1"
ggbeeswarm "ggbeeswarm" "0.7.2"
ggforce "ggforce" "0.4.2"
ggplot2 "ggplot2" "3.5.2"
ggpubr "ggpubr" "0.6.0"
ggraph "ggraph" "2.2.1"
ggrastr "ggrastr" "1.0.2"
ggrepel "ggrepel" "0.9.6"
ggridges "ggridges" "0.5.6"
ggsci "ggsci" "3.2.0"
ggsignif "ggsignif" "0.6.4"
ggstats "ggstats" "0.9.0"
gh "gh" "1.4.1"
gitcreds "gitcreds" "0.1.2"
GlobalOptions "GlobalOptions" "0.1.2"
globals "globals" "0.16.3"
glue "glue" "1.8.0"
goftest "goftest" "1.2-3"
googledrive "googledrive" "2.1.1"
googlesheets4 "googlesheets4" "1.1.1"
gower "gower" "1.0.1"
GPfit "GPfit" "1.0-9"
gplots "gplots" "3.2.0"
graph "graph" "1.80.0"
graphics "graphics" "4.3.3"
graphlayouts "graphlayouts" "1.2.2"
grDevices "grDevices" "4.3.3"
grid "grid" "4.3.3"
gridExtra "gridExtra" "2.3"
gtable "gtable" "0.3.6"
gtools "gtools" "3.9.5"
hardhat "hardhat" "1.4.1"
haven "haven" "2.5.4"
HDF5Array "HDF5Array" "1.30.0"
here "here" "1.0.1"
hexbin "hexbin" "1.28.5"
highr "highr" "0.11"
hms "hms" "1.1.3"
HSMMSingleCell "HSMMSingleCell" "1.22.0"
htmltools "htmltools" "0.5.8.1"
htmlwidgets "htmlwidgets" "1.6.4"
httpuv "httpuv" "1.6.15"
httr "httr" "1.4.7"
httr2 "httr2" "1.1.2"
ica "ica" "1.0-3"
ids "ids" "1.0.1"
igraph "igraph" "2.0.3"
infer "infer" "1.0.7"
ini "ini" "0.3.1"
ipred "ipred" "0.9-15"
IRanges "IRanges" "2.36.0"
IRdisplay "IRdisplay" "1.1"
IRkernel "IRkernel" "1.3.2"
irlba "irlba" "2.3.5.1"
isoband "isoband" "0.2.7"
iterators "iterators" "1.0.14"
jquerylib "jquerylib" "0.1.4"
jsonlite "jsonlite" "2.0.0"
KernSmooth "KernSmooth" "2.23-26"
knitr "knitr" "1.50"
labeling "labeling" "0.4.3"
labelled "labelled" "2.14.0"
lambda.r "lambda.r" "1.2.4"
languageserver "languageserver" "0.3.16"
later "later" "1.4.2"
lattice "lattice" "0.22-7"
lava "lava" "1.8.1"
lazyeval "lazyeval" "0.2.2"
leidenbase "leidenbase" "0.1.32"
lhs "lhs" "1.2.0"
lifecycle "lifecycle" "1.0.4"
limma "limma" "3.58.1"
lintr "lintr" "3.2.0"
listenv "listenv" "0.9.1"
lme4 "lme4" "1.1-37"
lmtest "lmtest" "0.9-40"
locfit "locfit" "1.5-9.12"
LoomExperiment "LoomExperiment" "1.20.0"
lubridate "lubridate" "1.9.4"
magrittr "magrittr" "2.0.3"
MASS "MASS" "7.3-60.0.1"
MAST "MAST" "1.28.0"
Matrix "Matrix" "1.6-5"
MatrixGenerics "MatrixGenerics" "1.14.0"
MatrixModels "MatrixModels" "0.5-4"
matrixStats "matrixStats" "1.5.0"
memoise "memoise" "2.0.1"
metapod "metapod" "1.10.0"
methods "methods" "4.3.3"
mgcv "mgcv" "1.9-3"
microbenchmark "microbenchmark" "1.5.0"
miloR "miloR" "1.10.0"
mime "mime" "0.13"
miniUI "miniUI" "0.1.1.1"
minqa "minqa" "1.2.8"
modeldata "modeldata" "1.4.0"
modelenv "modelenv" "0.2.0"
ModelMetrics "ModelMetrics" "1.2.2.2"
modelr "modelr" "0.1.11"
monocle "monocle" "2.30.0"
munsell "munsell" "0.5.1"
nlme "nlme" "3.1-168"
nloptr "nloptr" "2.2.1"
nnet "nnet" "7.3-20"
numDeriv "numDeriv" "2016.8-1.1"
nycflights13 "nycflights13" "1.0.2"
openssl "openssl" "2.3.2"
parallel "parallel" "4.3.3"
parallelly "parallelly" "1.43.0"
parsnip "parsnip" "1.3.1"
patchwork "patchwork" "1.3.0"
pbapply "pbapply" "1.7-2"
pbdZMQ "pbdZMQ" "0.3-14"
pbkrtest "pbkrtest" "0.5.3"
pheatmap "pheatmap" "1.0.12"
pillar "pillar" "1.10.2"
pkgbuild "pkgbuild" "1.4.7"
pkgconfig "pkgconfig" "2.0.3"
pkgdown "pkgdown" "2.1.1"
pkgload "pkgload" "1.4.0"
plogr "plogr" "0.2.0"
plotly "plotly" "4.10.4"
plyr "plyr" "1.8.9"
png "png" "0.1-8"
polyclip "polyclip" "1.10-7"
polynom "polynom" "1.4-1"
praise "praise" "1.0.0"
prettyunits "prettyunits" "1.2.0"
pROC "pROC" "1.18.5"
processx "processx" "3.8.6"
prodlim "prodlim" "2024.06.25"
profvis "profvis" "0.4.0"
progress "progress" "1.2.3"
progressr "progressr" "0.15.1"
promises "promises" "1.3.2"
proxy "proxy" "0.4-27"
ps "ps" "1.9.1"
purrr "purrr" "1.0.4"
qlcMatrix "qlcMatrix" "0.9.8"
quadprog "quadprog" "1.5-8"
quantmod "quantmod" "0.4.27"
quantreg "quantreg" "6.1"
R.cache "R.cache" "0.16.0"
R.methodsS3 "R.methodsS3" "1.8.2"
R.oo "R.oo" "1.27.0"
R.utils "R.utils" "2.13.0"
R6 "R6" "2.6.1"
ragg "ragg" "1.4.0"
randomForest "randomForest" "4.7-1.2"
RANN "RANN" "2.6.2"
rappdirs "rappdirs" "0.3.3"
RBGL "RBGL" "1.78.0"
rbibutils "rbibutils" "2.3"
rcmdcheck "rcmdcheck" "1.4.0"
RColorBrewer "RColorBrewer" "1.1-3"
Rcpp "Rcpp" "1.0.14"
RcppAnnoy "RcppAnnoy" "0.0.22"
RcppArmadillo "RcppArmadillo" "14.4.1-1"
RcppEigen "RcppEigen" "0.3.4.0.2"
RcppHNSW "RcppHNSW" "0.6.0"
RcppML "RcppML" "0.3.7"
RcppProgress "RcppProgress" "0.4.2"
RcppTOML "RcppTOML" "0.2.3"
RCurl "RCurl" "1.98-1.16"
Rdpack "Rdpack" "2.6.4"
readr "readr" "2.1.5"
readxl "readxl" "1.4.5"
recipes "recipes" "1.2.1"
reformulas "reformulas" "0.4.0"
rematch "rematch" "2.0.0"
rematch2 "rematch2" "2.1.2"
remotes "remotes" "2.5.0"
repr "repr" "1.1.7"
reprex "reprex" "2.1.1"
reshape2 "reshape2" "1.4.4"
reticulate "reticulate" "1.42.0"
rex "rex" "1.2.1"
rhdf5 "rhdf5" "2.46.1"
rhdf5filters "rhdf5filters" "1.14.1"
Rhdf5lib "Rhdf5lib" "1.24.0"
rjson "rjson" "0.2.23"
rlang "rlang" "1.1.6"
rmarkdown "rmarkdown" "2.29"
ROCR "ROCR" "1.0-11"
RODBC "RODBC" "1.3-25"
roxygen2 "roxygen2" "7.3.2"
rpart "rpart" "4.1.24"
rprojroot "rprojroot" "2.0.4"
rsample "rsample" "1.3.0"
RSpectra "RSpectra" "0.16-2"
RSQLite "RSQLite" "2.3.9"
rstatix "rstatix" "0.7.2"
rstudioapi "rstudioapi" "0.17.1"
rsvd "rsvd" "1.0.5"
Rtsne "Rtsne" "0.17"
RUnit "RUnit" "0.4.33"
rversions "rversions" "2.1.2"
rvest "rvest" "1.0.4"
S4Arrays "S4Arrays" "1.2.0"
S4Vectors "S4Vectors" "0.40.2"
sass "sass" "0.4.10"
ScaledMatrix "ScaledMatrix" "1.10.0"
scales "scales" "1.3.0"
scater "scater" "1.30.1"
scattermore "scattermore" "1.2"
sceasy "sceasy" "0.0.7"
scran "scran" "1.30.0"
sctransform "sctransform" "0.4.1"
scuttle "scuttle" "1.12.0"
selectr "selectr" "0.4-2"
sessioninfo "sessioninfo" "1.2.3"
Seurat "Seurat" "5.2.1"
SeuratObject "SeuratObject" "5.0.2"
sfd "sfd" "0.1.0"
shape "shape" "1.4.6.1"
shiny "shiny" "1.10.0"
SingleCellExperiment "SingleCellExperiment" "1.24.0"
sitmo "sitmo" "2.0.2"
slam "slam" "0.1-55"
slider "slider" "0.3.2"
snow "snow" "0.4-4"
sourcetools "sourcetools" "0.1.7-1"
sp "sp" "2.2-0"
spam "spam" "2.11-1"
SparseArray "SparseArray" "1.2.2"
SparseM "SparseM" "1.84-2"
sparseMatrixStats "sparseMatrixStats" "1.14.0"
sparsesvd "sparsesvd" "0.2-2"
sparsevctrs "sparsevctrs" "0.3.2"
spatstat.data "spatstat.data" "3.1-6"
spatstat.explore "spatstat.explore" "3.4-2"
spatstat.geom "spatstat.geom" "3.3-6"
spatstat.random "spatstat.random" "3.3-3"
spatstat.sparse "spatstat.sparse" "3.1-0"
spatstat.univar "spatstat.univar" "3.1-2"
spatstat.utils "spatstat.utils" "3.1-3"
splines "splines" "4.3.3"
SQUAREM "SQUAREM" "2021.1"
statmod "statmod" "1.5.0"
stats "stats" "4.3.3"
stats4 "stats4" "4.3.3"
stringi "stringi" "1.8.7"
stringr "stringr" "1.5.1"
styler "styler" "1.10.3"
SummarizedExperiment "SummarizedExperiment" "1.32.0"
survival "survival" "3.8-3"
sys "sys" "3.4.3"
systemfonts "systemfonts" "1.2.1"
tcltk "tcltk" "4.3.3"
tensor "tensor" "1.5"
testthat "testthat" "3.2.3"
textshaping "textshaping" "1.0.0"
tibble "tibble" "3.2.1"
tidygraph "tidygraph" "1.3.0"
tidymodels "tidymodels" "1.3.0"
tidyr "tidyr" "1.3.1"
tidyselect "tidyselect" "1.2.1"
tidyverse "tidyverse" "2.0.0"
timechange "timechange" "0.3.0"
timeDate "timeDate" "4041.110"
tinytex "tinytex" "0.56"
tools "tools" "4.3.3"
tseries "tseries" "0.10-58"
TTR "TTR" "0.24.4"
tune "tune" "1.3.0"
tweenr "tweenr" "2.0.3"
tzdb "tzdb" "0.5.0"
urca "urca" "1.3-4"
urlchecker "urlchecker" "1.0.1"
usethis "usethis" "3.1.0"
utf8 "utf8" "1.2.4"
utils "utils" "4.3.3"
uuid "uuid" "1.2-1"
uwot "uwot" "0.2.3"
vctrs "vctrs" "0.6.5"
VGAM "VGAM" "1.1-13"
vipor "vipor" "0.4.7"
viridis "viridis" "0.6.5"
viridisLite "viridisLite" "0.4.2"
vroom "vroom" "1.6.5"
waldo "waldo" "0.6.1"
warp "warp" "0.2.1"
whisker "whisker" "0.4.1"
withr "withr" "3.0.2"
workflows "workflows" "1.2.0"
workflowsets "workflowsets" "1.1.0"
writexl "writexl" "1.5.4"
xfun "xfun" "0.52"
XML "XML" "3.99-0.17"
xml2 "xml2" "1.3.8"
xmlparsedata "xmlparsedata" "1.0.5"
xopen "xopen" "1.0.1"
xtable "xtable" "1.8-4"
xts "xts" "0.14.1"
XVector "XVector" "0.42.0"
yaml "yaml" "2.3.10"
yardstick "yardstick" "1.3.2"
zip "zip" "2.3.2"
zlibbioc "zlibbioc" "1.48.0"
zoo "zoo" "1.8-14"
>
>