aarch64 default rnaseq notebook 390f80e2ac4b - fbnrst/sequencing-docker-stacks GitHub Wiki

Build manifest for image: rnaseq-notebook:390f80e2ac4b

Build Info

  • Build timestamp: 2025-05-05T08:46:33Z
  • Docker image: quay.io/fbnrst/rnaseq-notebook:390f80e2ac4b
  • Docker image size: 10.8GB
  • Git commit SHA: 390f80e2ac4b54da4da2da0c8364be9107679d75
  • Git commit message:
workaround for test_run_hooks.py failing #44

Python Packages

Python 3.12.10

conda info:

     active environment : None
       user config file : /home/jovyan/.condarc
 populated config files : /opt/conda/.condarc
                          /home/jovyan/.condarc
          conda version : 25.3.1
    conda-build version : not installed
         python version : 3.12.10.final.0
                 solver : libmamba (default)
       virtual packages : __archspec=1=neoverse_n2
                          __conda=25.3.1=0
                          __glibc=2.39=0
                          __linux=6.8.0=0
                          __unix=0=0
       base environment : /opt/conda  (writable)
      conda av data dir : /opt/conda/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-aarch64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-aarch64
                          https://conda.anaconda.org/bioconda/noarch
          package cache : /opt/conda/pkgs
                          /home/jovyan/.conda/pkgs
       envs directories : /opt/conda/envs
                          /home/jovyan/.conda/envs
               platform : linux-aarch64
             user-agent : conda/25.3.1 requests/2.32.3 CPython/3.12.10 Linux/6.8.0-1021-azure ubuntu/24.04.2 glibc/2.39 solver/libmamba conda-libmamba-solver/25.4.0 libmambapy/2.1.0
                UID:GID : 1000:100
             netrc file : None
           offline mode : False

mamba info:

       libmamba version : 2.1.0
          mamba version : 2.1.0
           curl version : libcurl/8.13.0 OpenSSL/3.5.0 zlib/1.3.1 zstd/1.5.7 libssh2/1.11.1 nghttp2/1.64.0
     libarchive version : libarchive 3.7.7 zlib/1.3.1 liblzma/5.8.1 bz2lib/1.0.8 liblz4/1.10.0 libzstd/1.5.7
       envs directories : /opt/conda/envs
          package cache : /opt/conda/pkgs
                          /home/jovyan/.mamba/pkgs
            environment : base
           env location : /opt/conda
      user config files : /home/jovyan/.mambarc
 populated config files : /home/jovyan/.condarc
                          /opt/conda/.condarc
       virtual packages : __unix=0=0
                          __linux=6.8.0=0
                          __glibc=2.39=0
                          __archspec=1=aarch64
               channels : https://conda.anaconda.org/conda-forge/linux-aarch64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-aarch64
                          https://conda.anaconda.org/bioconda/noarch
       base environment : /opt/conda
               platform : linux-aarch64

mamba list:

List of packages in environment: "/opt/conda"

  Name                               Version         Build                    Channel
───────────────────────────────────────────────────────────────────────────────────────────
  _openmp_mutex                      4.5             2_gnu                    conda-forge
  _r-mutex                           1.0.1           anacondar_1              conda-forge
  adwaita-icon-theme                 48.0            unix_0                   conda-forge
  aiohappyeyeballs                   2.6.1           pyhd8ed1ab_0             conda-forge
  aiohttp                            3.11.18         py312hcc812fe_0          conda-forge
  aiosignal                          1.3.2           pyhd8ed1ab_0             conda-forge
  alembic                            1.15.2          pyhd8ed1ab_0             conda-forge
  altair                             5.5.0           pyhd8ed1ab_1             conda-forge
  annotated-types                    0.7.0           pyhd8ed1ab_1             conda-forge
  anyio                              4.9.0           pyh29332c3_0             conda-forge
  aom                                3.9.1           hcccb83c_0               conda-forge
  archspec                           0.2.5           pyhd8ed1ab_0             conda-forge
  argcomplete                        3.6.2           pyhd8ed1ab_0             conda-forge
  argon2-cffi                        23.1.0          pyhd8ed1ab_1             conda-forge
  argon2-cffi-bindings               21.2.0          py312hb2c0f52_5          conda-forge
  arrow                              1.3.0           pyhd8ed1ab_1             conda-forge
  asttokens                          3.0.0           pyhd8ed1ab_1             conda-forge
  async-lru                          2.0.5           pyh29332c3_0             conda-forge
  async_generator                    1.10            pyhd8ed1ab_2             conda-forge
  at-spi2-atk                        2.38.0          h1f2db35_3               conda-forge
  at-spi2-core                       2.40.3          h1f2db35_0               conda-forge
  atk-1.0                            2.38.0          hedc4a1f_2               conda-forge
  attrs                              25.3.0          pyh71513ae_0             conda-forge
  aws-c-auth                         0.9.0           h95b9451_4               conda-forge
  aws-c-cal                          0.9.0           hd3244b7_0               conda-forge
  aws-c-common                       0.12.2          h86ecc28_0               conda-forge
  aws-c-compression                  0.3.1           h0e0e653_4               conda-forge
  aws-c-event-stream                 0.5.4           h31b3b94_7               conda-forge
  aws-c-http                         0.10.0          h72b5390_0               conda-forge
  aws-c-io                           0.18.1          h2568391_2               conda-forge
  aws-c-mqtt                         0.12.3          h1ae5684_4               conda-forge
  aws-c-s3                           0.7.16          h9338227_1               conda-forge
  aws-c-sdkutils                     0.2.3           h0e0e653_4               conda-forge
  aws-checksums                      0.2.7           h0e0e653_0               conda-forge
  aws-crt-cpp                        0.32.4          haf6e050_2               conda-forge
  aws-sdk-cpp                        1.11.510        h1ec33e8_6               conda-forge
  azure-core-cpp                     1.14.0          h1887c18_0               conda-forge
  azure-identity-cpp                 1.10.0          h47b0b28_0               conda-forge
  azure-storage-blobs-cpp            12.13.0         h185ecfd_1               conda-forge
  azure-storage-common-cpp           12.8.0          h1b94036_1               conda-forge
  azure-storage-files-datalake-cpp   12.12.0         h37d6d07_1               conda-forge
  babel                              2.17.0          pyhd8ed1ab_0             conda-forge
  beautifulsoup4                     4.13.4          pyha770c72_0             conda-forge
  binutils_impl_linux-aarch64        2.43            h4c662bb_4               conda-forge
  bioconductor-affy                  1.84.0          r44h59b44dc_1            bioconda
  bioconductor-affyio                1.76.0          r44h8793571_0            bioconda
  bioconductor-annotate              1.84.0          r44hdfd78af_0            bioconda
  bioconductor-annotationdbi         1.68.0          r44hdfd78af_0            bioconda
  bioconductor-annotationfilter      1.30.0          r44hdfd78af_0            bioconda
  bioconductor-annotationhub         3.14.0          r44hdfd78af_0            bioconda
  bioconductor-apeglm                1.28.0          r44h12ab77f_1            bioconda
  bioconductor-assorthead            1.0.0           r44hdfd78af_0            bioconda
  bioconductor-basilisk              1.18.0          r44hdfd78af_0            bioconda
  bioconductor-basilisk.utils        1.18.0          r44hdfd78af_0            bioconda
  bioconductor-beachmat              2.22.0          r44h12ab77f_1            bioconda
  bioconductor-biobase               2.66.0          r44h59b44dc_0            bioconda
  bioconductor-biocfilecache         2.14.0          r44hdfd78af_0            bioconda
  bioconductor-biocgenerics          0.52.0          r44hdfd78af_3            bioconda
  bioconductor-biocio                1.16.0          r44hdfd78af_0            bioconda
  bioconductor-biocparallel          1.40.0          r44h12ab77f_1            bioconda
  bioconductor-biocsingular          1.22.0          r44h12ab77f_1            bioconda
  bioconductor-biocversion           3.20.0          r44hdfd78af_0            bioconda
  bioconductor-biomart               2.62.0          r44hdfd78af_0            bioconda
  bioconductor-biostrings            2.74.0          r44h59b44dc_1            bioconda
  bioconductor-clusterprofiler       4.14.0          r44hdfd78af_0            bioconda
  bioconductor-complexheatmap        2.22.0          r44hdfd78af_0            bioconda
  bioconductor-data-packages         20250401        hdfd78af_0               bioconda
  bioconductor-delayedarray          0.32.0          r44h59b44dc_1            bioconda
  bioconductor-delayedmatrixstats    1.28.0          r44hdfd78af_0            bioconda
  bioconductor-deseq2                1.46.0          r44h12ab77f_1            bioconda
  bioconductor-dir.expiry            1.14.0          r44hdfd78af_0            bioconda
  bioconductor-dose                  4.0.0           r44hdfd78af_0            bioconda
  bioconductor-enrichplot            1.26.1          r44hdfd78af_0            bioconda
  bioconductor-ensembldb             2.30.0          r44hdfd78af_0            bioconda
  bioconductor-fgsea                 1.32.2          r44h12ab77f_0            bioconda
  bioconductor-genomeinfodb          1.42.0          r44hdfd78af_2            bioconda
  bioconductor-genomeinfodbdata      1.2.13          r44hdfd78af_0            bioconda
  bioconductor-genomicalignments     1.42.0          r44h59b44dc_1            bioconda
  bioconductor-genomicfeatures       1.58.0          r44hdfd78af_0            bioconda
  bioconductor-genomicranges         1.58.0          r44h59b44dc_2            bioconda
  bioconductor-ggtree                3.14.0          r44hdfd78af_0            bioconda
  bioconductor-glmgampoi             1.18.0          r44h12ab77f_2            bioconda
  bioconductor-go.db                 3.20.0          r44hdfd78af_0            bioconda
  bioconductor-gosemsim              2.32.0          r44h12ab77f_1            bioconda
  bioconductor-graph                 1.84.0          r44h59b44dc_1            bioconda
  bioconductor-graphite              1.52.0          r44hdfd78af_0            bioconda
  bioconductor-gseabase              1.68.0          r44hdfd78af_0            bioconda
  bioconductor-gsva                  2.0.0           r44h59b44dc_1            bioconda
  bioconductor-hdf5array             1.34.0          r44h8793571_1            bioconda
  bioconductor-iranges               2.40.0          r44h59b44dc_2            bioconda
  bioconductor-keggrest              1.46.0          r44hdfd78af_0            bioconda
  bioconductor-limma                 3.62.1          r44h8793571_1            bioconda
  bioconductor-matrixgenerics        1.18.0          r44hdfd78af_0            bioconda
  bioconductor-org.hs.eg.db          3.20.0          r44hdfd78af_0            bioconda
  bioconductor-org.mm.eg.db          3.20.0          r44hdfd78af_0            bioconda
  bioconductor-preprocesscore        1.68.0          r44h59b44dc_1            bioconda
  bioconductor-protgenerics          1.38.0          r44hdfd78af_1            bioconda
  bioconductor-qvalue                2.38.0          r44hdfd78af_0            bioconda
  bioconductor-reactome.db           1.89.0          r44hdfd78af_0            bioconda
  bioconductor-reactomepa            1.50.0          r44hdfd78af_0            bioconda
  bioconductor-rhdf5                 2.50.0          r44h6e81ef9_1            bioconda
  bioconductor-rhdf5filters          1.18.0          r44h6e81ef9_1            bioconda
  bioconductor-rhdf5lib              1.28.0          r44h8793571_0            bioconda
  bioconductor-rhtslib               3.2.0           r44h8793571_2            bioconda
  bioconductor-rsamtools             2.22.0          r44h6e81ef9_1            bioconda
  bioconductor-rtracklayer           1.66.0          r44h8793571_1            bioconda
  bioconductor-s4arrays              1.6.0           r44h59b44dc_1            bioconda
  bioconductor-s4vectors             0.44.0          r44h59b44dc_2            bioconda
  bioconductor-scaledmatrix          1.14.0          r44hdfd78af_0            bioconda
  bioconductor-scuttle               1.16.0          r44h12ab77f_1            bioconda
  bioconductor-singlecellexperiment  1.28.0          r44hdfd78af_0            bioconda
  bioconductor-sparsearray           1.6.0           r44h59b44dc_1            bioconda
  bioconductor-sparsematrixstats     1.18.0          r44h12ab77f_1            bioconda
  bioconductor-spatialexperiment     1.16.0          r44hdfd78af_0            bioconda
  bioconductor-summarizedexperiment  1.36.0          r44hdfd78af_0            bioconda
  bioconductor-treeio                1.30.0          r44hdfd78af_0            bioconda
  bioconductor-txdbmaker             1.2.0           r44hdfd78af_0            bioconda
  bioconductor-tximeta               1.24.0          r44hdfd78af_0            bioconda
  bioconductor-tximport              1.34.0          r44hdfd78af_0            bioconda
  bioconductor-ucsc.utils            1.2.0           r44hdfd78af_0            bioconda
  bioconductor-vsn                   3.74.0          r44h59b44dc_1            bioconda
  bioconductor-xvector               0.46.0          r44h8793571_2            bioconda
  bioconductor-zellkonverter         1.16.0          r44hdfd78af_0            bioconda
  bioconductor-zlibbioc              1.52.0          r44h59b44dc_2            bioconda
  biopython                          1.85            py312hb2c0f52_1          conda-forge
  blas                               2.131           openblas                 conda-forge
  blas-devel                         3.9.0           31_h9678261_openblas     conda-forge
  bleach                             6.2.0           pyh29332c3_4             conda-forge
  bleach-with-css                    6.2.0           h82add2a_4               conda-forge
  blinker                            1.9.0           pyhff2d567_0             conda-forge
  blosc                              1.21.6          hb4dfabd_1               conda-forge
  bokeh                              3.7.2           pyhd8ed1ab_1             conda-forge
  boltons                            24.0.0          pyhd8ed1ab_1             conda-forge
  bottleneck                         1.4.2           py312h681ec18_0          conda-forge
  brotli                             1.1.0           h86ecc28_2               conda-forge
  brotli-bin                         1.1.0           h86ecc28_2               conda-forge
  brotli-python                      1.1.0           py312h6f74592_2          conda-forge
  brunsli                            0.1             h01db608_0               conda-forge
  bwidget                            1.10.1          h8af1aa0_0               conda-forge
  bzip2                              1.0.8           h68df207_7               conda-forge
  c-ares                             1.34.5          h86ecc28_0               conda-forge
  c-blosc2                           2.15.2          h6221edb_1               conda-forge
  ca-certificates                    2025.4.26       hbd8a1cb_0               conda-forge
  cached-property                    1.5.2           hd8ed1ab_1               conda-forge
  cached_property                    1.5.2           pyha770c72_1             conda-forge
  cairo                              1.18.4          h83712da_0               conda-forge
  certifi                            2025.1.31       pyhd8ed1ab_0             conda-forge
  certipy                            0.2.2           pyhd8ed1ab_0             conda-forge
  cffi                               1.17.1          py312hac81daf_0          conda-forge
  charls                             2.4.2           h2f0025b_0               conda-forge
  charset-normalizer                 3.4.2           pyhd8ed1ab_0             conda-forge
  click                              8.1.8           pyh707e725_0             conda-forge
  cloudpickle                        3.1.1           pyhd8ed1ab_0             conda-forge
  colorama                           0.4.6           pyhd8ed1ab_1             conda-forge
  comm                               0.2.2           pyhd8ed1ab_1             conda-forge
  conda                              25.3.1          py312h996f985_1          conda-forge
  conda-libmamba-solver              25.4.0          pyhd8ed1ab_0             conda-forge
  conda-package-handling             2.4.0           pyh7900ff3_2             conda-forge
  conda-package-streaming            0.11.0          pyhd8ed1ab_1             conda-forge
  contourpy                          1.3.2           py312h451a7dd_0          conda-forge
  cpp-expected                       1.1.0           h17cf362_1               conda-forge
  cpython                            3.12.10         py312hd8ed1ab_0          conda-forge
  cryptography                       44.0.3          py312he723553_0          conda-forge
  curl                               8.13.0          h6702fde_0               conda-forge
  cycler                             0.12.1          pyhd8ed1ab_1             conda-forge
  cython                             3.0.12          py312hb75641d_0          conda-forge
  cytoolz                            1.0.1           py312h52516f5_0          conda-forge
  dask                               2025.4.1        pyhd8ed1ab_0             conda-forge
  dask-core                          2025.4.1        pyhd8ed1ab_0             conda-forge
  dav1d                              1.2.1           h31becfc_0               conda-forge
  dbus                               1.13.6          h12b9eeb_3               conda-forge
  debugpy                            1.8.14          py312h6f74592_0          conda-forge
  decorator                          5.2.1           pyhd8ed1ab_0             conda-forge
  defusedxml                         0.7.1           pyhd8ed1ab_0             conda-forge
  dill                               0.4.0           pyhd8ed1ab_0             conda-forge
  distributed                        2025.4.1        pyhd8ed1ab_0             conda-forge
  distro                             1.9.0           pyhd8ed1ab_1             conda-forge
  epoxy                              1.5.10          h4e544f5_1               conda-forge
  et_xmlfile                         2.0.0           pyhd8ed1ab_1             conda-forge
  exceptiongroup                     1.2.2           pyhd8ed1ab_1             conda-forge
  executing                          2.2.0           pyhd8ed1ab_0             conda-forge
  expat                              2.7.0           h5ad3122_0               conda-forge
  fftw                               3.3.10          nompi_h020dacd_110       conda-forge
  fmt                                11.1.4          h97e1849_1               conda-forge
  font-ttf-dejavu-sans-mono          2.37            hab24e00_0               conda-forge
  font-ttf-inconsolata               3.000           h77eed37_0               conda-forge
  font-ttf-source-code-pro           2.038           h77eed37_0               conda-forge
  font-ttf-ubuntu                    0.83            h77eed37_3               conda-forge
  fontconfig                         2.15.0          h8dda3cd_1               conda-forge
  fonts-conda-ecosystem              1               0                        conda-forge
  fonts-conda-forge                  1               0                        conda-forge
  fonttools                          4.57.0          py312hcc812fe_0          conda-forge
  fqdn                               1.5.1           pyhd8ed1ab_1             conda-forge
  freetype                           2.13.3          h8af1aa0_1               conda-forge
  fribidi                            1.0.10          hb9de7d4_0               conda-forge
  frozendict                         2.4.6           py312hb2c0f52_0          conda-forge
  frozenlist                         1.5.0           py312hcc812fe_1          conda-forge
  fsspec                             2025.3.2        pyhd8ed1ab_0             conda-forge
  future                             1.0.0           pyhd8ed1ab_2             conda-forge
  gcc_impl_linux-aarch64             14.2.0          h39ab8d2_2               conda-forge
  gdk-pixbuf                         2.42.12         ha61d561_0               conda-forge
  gflags                             2.2.2           h5ad3122_1005            conda-forge
  gfortran_impl_linux-aarch64        14.2.0          hf71498c_2               conda-forge
  ghostscript                        10.04.0         h5ad3122_0               conda-forge
  giflib                             5.2.2           h31becfc_0               conda-forge
  gitdb                              4.0.12          pyhd8ed1ab_0             conda-forge
  gitpython                          3.1.44          pyhff2d567_0             conda-forge
  glib-tools                         2.84.1          h78ca943_0               conda-forge
  glog                               0.7.1           h468a4a4_0               conda-forge
  glpk                               5.0             h66325d0_0               conda-forge
  gmp                                6.3.0           h0a1ffab_2               conda-forge
  gmpy2                              2.2.1           py312he9d48ea_0          conda-forge
  graphite2                          1.3.13          h2f0025b_1003            conda-forge
  graphviz                           12.2.1          h044d27a_1               conda-forge
  greenlet                           3.2.1           py312h6f74592_0          conda-forge
  gseapy                             1.1.8           py312h981cfc2_0          bioconda
  gsl                                2.7             h294027d_0               conda-forge
  gtk3                               3.24.43         hc7d089d_5               conda-forge
  gts                                0.7.6           he293c15_4               conda-forge
  gxx_impl_linux-aarch64             14.2.0          h1262d8f_2               conda-forge
  h11                                0.16.0          pyhd8ed1ab_0             conda-forge
  h2                                 4.2.0           pyhd8ed1ab_0             conda-forge
  h5py                               3.13.0          nompi_py312h9a738b8_100  conda-forge
  harfbuzz                           11.1.0          h405b6a2_0               conda-forge
  hdf5                               1.14.3          nompi_h6ed7ac7_109       conda-forge
  hicolor-icon-theme                 0.17            h8af1aa0_2               conda-forge
  hpack                              4.1.0           pyhd8ed1ab_0             conda-forge
  httpcore                           1.0.9           pyh29332c3_0             conda-forge
  httpx                              0.28.1          pyhd8ed1ab_0             conda-forge
  hyperframe                         6.1.0           pyhd8ed1ab_0             conda-forge
  icu                                75.1            hf9b3779_0               conda-forge
  idna                               3.10            pyhd8ed1ab_1             conda-forge
  imagecodecs                        2024.12.30      py312he24593b_0          conda-forge
  imageio                            2.37.0          pyhfb79c49_0             conda-forge
  imagemagick                        7.1.1_47        gpl_h2252769_0           conda-forge
  importlib-metadata                 8.6.1           pyha770c72_0             conda-forge
  importlib_resources                6.5.2           pyhd8ed1ab_0             conda-forge
  ipykernel                          6.29.5          pyh3099207_0             conda-forge
  ipympl                             0.9.7           pyhd8ed1ab_1             conda-forge
  ipython                            9.2.0           pyhfb0248b_0             conda-forge
  ipython_genutils                   0.2.0           pyhd8ed1ab_2             conda-forge
  ipython_pygments_lexers            1.1.1           pyhd8ed1ab_0             conda-forge
  ipywidgets                         8.1.6           pyhd8ed1ab_0             conda-forge
  isoduration                        20.11.0         pyhd8ed1ab_1             conda-forge
  jbig                               2.1             hf897c2e_2003            conda-forge
  jedi                               0.19.2          pyhd8ed1ab_1             conda-forge
  jinja2                             3.1.6           pyhd8ed1ab_0             conda-forge
  joblib                             1.5.0           pyhd8ed1ab_0             conda-forge
  jq                                 1.7.1           h31becfc_0               conda-forge
  json5                              0.12.0          pyhd8ed1ab_0             conda-forge
  jsonpatch                          1.33            pyhd8ed1ab_1             conda-forge
  jsonpointer                        3.0.0           py312h996f985_1          conda-forge
  jsonschema                         4.23.0          pyhd8ed1ab_1             conda-forge
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  statsmodels                        0.14.4          py312h681ec18_0          conda-forge
  stdlib-list                        0.11.1          pyhd8ed1ab_0             conda-forge
  svt-av1                            3.0.2           h5ad3122_0               conda-forge
  sympy                              1.14.0          pyh2585a3b_105           conda-forge
  sysroot_linux-aarch64              2.17            h68829e0_18              conda-forge
  tblib                              3.1.0           pyhd8ed1ab_0             conda-forge
  terminado                          0.18.1          pyh0d859eb_0             conda-forge
  threadpoolctl                      3.6.0           pyhecae5ae_0             conda-forge
  tifffile                           2025.3.30       pyhd8ed1ab_0             conda-forge
  tinycss2                           1.4.0           pyhd8ed1ab_0             conda-forge
  tk                                 8.6.13          h194ca79_0               conda-forge
  tktable                            2.10            h52f7bd3_6               conda-forge
  toml                               0.10.2          pyhd8ed1ab_1             conda-forge
  tomli                              2.2.1           pyhd8ed1ab_1             conda-forge
  tomlkit                            0.13.2          pyha770c72_1             conda-forge
  toolz                              1.0.0           pyhd8ed1ab_1             conda-forge
  tornado                            6.4.2           py312h52516f5_0          conda-forge
  tqdm                               4.67.1          pyhd8ed1ab_1             conda-forge
  traitlets                          5.14.3          pyhd8ed1ab_1             conda-forge
  truststore                         0.10.1          pyh29332c3_0             conda-forge
  types-python-dateutil              2.9.0.20241206  pyhd8ed1ab_0             conda-forge
  typing-extensions                  4.13.2          h0e9735f_0               conda-forge
  typing-inspection                  0.4.0           pyhd8ed1ab_0             conda-forge
  typing_extensions                  4.13.2          pyh29332c3_0             conda-forge
  typing_utils                       0.1.0           pyhd8ed1ab_1             conda-forge
  tzdata                             2025b           h78e105d_0               conda-forge
  tzlocal                            5.3             py312h996f985_0          conda-forge
  unicodedata2                       16.0.0          py312hb2c0f52_0          conda-forge
  unixodbc                           2.3.12          h7b6a552_0               conda-forge
  uri-template                       1.3.0           pyhd8ed1ab_1             conda-forge
  urllib3                            2.4.0           pyhd8ed1ab_0             conda-forge
  wayland                            1.23.1          h698ed42_1               conda-forge
  wcwidth                            0.2.13          pyhd8ed1ab_1             conda-forge
  webcolors                          24.11.1         pyhd8ed1ab_0             conda-forge
  webencodings                       0.5.1           pyhd8ed1ab_3             conda-forge
  websocket-client                   1.8.0           pyhd8ed1ab_1             conda-forge
  wheel                              0.45.1          pyhd8ed1ab_1             conda-forge
  widgetsnbextension                 4.0.14          pyhd8ed1ab_0             conda-forge
  x265                               3.5             hdd96247_3               conda-forge
  xkeyboard-config                   2.44            h86ecc28_0               conda-forge
  xlrd                               2.0.1           pyhd8ed1ab_3             conda-forge
  xmltodict                          0.14.2          pyhd8ed1ab_1             conda-forge
  xorg-libice                        1.1.2           h86ecc28_0               conda-forge
  xorg-libsm                         1.2.6           h0808dbd_0               conda-forge
  xorg-libx11                        1.8.12          hca56bd8_0               conda-forge
  xorg-libxau                        1.0.12          h86ecc28_0               conda-forge
  xorg-libxcomposite                 0.4.6           h86ecc28_2               conda-forge
  xorg-libxcursor                    1.2.3           h86ecc28_0               conda-forge
  xorg-libxdamage                    1.1.6           h86ecc28_0               conda-forge
  xorg-libxdmcp                      1.1.5           h57736b2_0               conda-forge
  xorg-libxext                       1.3.6           h57736b2_0               conda-forge
  xorg-libxfixes                     6.0.1           h57736b2_0               conda-forge
  xorg-libxi                         1.8.2           h57736b2_0               conda-forge
  xorg-libxinerama                   1.1.5           h5ad3122_1               conda-forge
  xorg-libxrandr                     1.5.4           h86ecc28_0               conda-forge
  xorg-libxrender                    0.9.12          h86ecc28_0               conda-forge
  xorg-libxt                         1.3.1           h57736b2_0               conda-forge
  xorg-libxtst                       1.2.5           h57736b2_3               conda-forge
  xyzservices                        2025.4.0        pyhd8ed1ab_0             conda-forge
  yaml                               0.2.5           hf897c2e_2               conda-forge
  yaml-cpp                           0.8.0           h5ad3122_0               conda-forge
  yarl                               1.20.0          py312hcc812fe_0          conda-forge
  yq                                 3.4.3           pyhd8ed1ab_1             conda-forge
  zeromq                             4.3.5           h5efb499_7               conda-forge
  zfp                                1.0.1           h5ad3122_2               conda-forge
  zict                               3.0.0           pyhd8ed1ab_1             conda-forge
  zipp                               3.21.0          pyhd8ed1ab_1             conda-forge
  zlib                               1.3.1           h86ecc28_2               conda-forge
  zlib-ng                            2.2.4           hf428078_0               conda-forge
  zstandard                          0.23.0          py312hb2c0f52_2          conda-forge
  zstd                               1.5.7           hbcf94c1_2               conda-forge

Apt Packages

apt list --installed:

WARNING: apt does not have a stable CLI interface. Use with caution in scripts.

Listing...
adduser/now 3.137ubuntu1 all [installed,local]
apt/now 2.7.14build2 arm64 [installed,local]
base-files/now 13ubuntu10.2 arm64 [installed,local]
base-passwd/now 3.6.3build1 arm64 [installed,local]
bash/now 5.2.21-2ubuntu4 arm64 [installed,local]
binutils-aarch64-linux-gnu/now 2.42-4ubuntu2.5 arm64 [installed,local]
binutils-common/now 2.42-4ubuntu2.5 arm64 [installed,local]
binutils/now 2.42-4ubuntu2.5 arm64 [installed,local]
bsdutils/now 1:2.39.3-9ubuntu6.2 arm64 [installed,local]
build-essential/now 12.10ubuntu1 arm64 [installed,local]
bzip2/now 1.0.8-5.1build0.1 arm64 [installed,local]
ca-certificates/now 20240203 all [installed,local]
cm-super-minimal/now 0.3.4-17 all [installed,local]
cm-super/now 0.3.4-17 all [installed,local]
coreutils/now 9.4-3ubuntu6 arm64 [installed,local]
cpp-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
cpp-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
cpp-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
cpp/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
curl/now 8.5.0-2ubuntu10.6 arm64 [installed,local]
dash/now 0.5.12-6ubuntu5 arm64 [installed,local]
debconf/now 1.5.86ubuntu1 all [installed,local]
debianutils/now 5.17build1 arm64 [installed,local]
diffutils/now 1:3.10-1build1 arm64 [installed,local]
dpkg-dev/now 1.22.6ubuntu6.1 all [installed,local]
dpkg/now 1.22.6ubuntu6.1 arm64 [installed,local]
dvipng/now 1.15-1.1 arm64 [installed,local]
e2fsprogs/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
ffmpeg/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
findutils/now 4.9.0-5build1 arm64 [installed,local]
fontconfig-config/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
fontconfig/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
fonts-dejavu-core/now 2.37-8 all [installed,local]
fonts-dejavu-extra/now 2.37-8 all [installed,local]
fonts-dejavu-mono/now 2.37-8 all [installed,local]
fonts-dejavu/now 2.37-8 all [installed,local]
fonts-liberation/now 1:2.1.5-3 all [installed,local]
fonts-lmodern/now 2.005-1 all [installed,local]
fonts-urw-base35/now 20200910-8 all [installed,local]
g++-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
g++-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
g++-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
g++/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gcc-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gcc-13-base/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gcc-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gcc-14-base/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
gcc-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gcc/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gfortran-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gfortran-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gfortran-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gfortran/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
ghostscript/now 10.02.1~dfsg1-0ubuntu7.6 arm64 [installed,local]
git-man/now 1:2.43.0-1ubuntu7.2 all [installed,local]
git/now 1:2.43.0-1ubuntu7.2 arm64 [installed,local]
gpgv/now 2.4.4-2ubuntu17.2 arm64 [installed,local]
grep/now 3.11-4build1 arm64 [installed,local]
gzip/now 1.12-1ubuntu3 arm64 [installed,local]
hostname/now 3.23+nmu2ubuntu2 arm64 [installed,local]
init-system-helpers/now 1.66ubuntu1 all [installed,local]
less/now 590-2ubuntu2.1 arm64 [installed,local]
libacl1/now 2.3.2-1build1.1 arm64 [installed,local]
libaom3/now 3.8.2-2ubuntu0.1 arm64 [installed,local]
libapache-pom-java/now 29-2 all [installed,local]
libapparmor1/now 4.0.1really4.0.1-0ubuntu0.24.04.4 arm64 [installed,local]
libapt-pkg6.0t64/now 2.7.14build2 arm64 [installed,local]
libasan8/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libasound2-data/now 1.2.11-1build2 all [installed,local]
libasound2t64/now 1.2.11-1build2 arm64 [installed,local]
libass9/now 1:0.17.1-2build1 arm64 [installed,local]
libassuan0/now 2.5.6-1build1 arm64 [installed,local]
libasyncns0/now 0.8-6build4 arm64 [installed,local]
libatomic1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libattr1/now 1:2.5.2-1build1.1 arm64 [installed,local]
libaudit-common/now 1:3.1.2-2.1build1.1 all [installed,local]
libaudit1/now 1:3.1.2-2.1build1.1 arm64 [installed,local]
libavahi-client3/now 0.8-13ubuntu6 arm64 [installed,local]
libavahi-common-data/now 0.8-13ubuntu6 arm64 [installed,local]
libavahi-common3/now 0.8-13ubuntu6 arm64 [installed,local]
libavc1394-0/now 0.5.4-5build3 arm64 [installed,local]
libavcodec60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavdevice60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavfilter9/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavformat60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavutil58/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libbinutils/now 2.42-4ubuntu2.5 arm64 [installed,local]
libblas3/now 3.12.0-3build1.1 arm64 [installed,local]
libblkid1/now 2.39.3-9ubuntu6.2 arm64 [installed,local]
libbluray2/now 1:1.3.4-1build1 arm64 [installed,local]
libbrotli1/now 1.1.0-2build2 arm64 [installed,local]
libbs2b0/now 3.1.0+dfsg-7build1 arm64 [installed,local]
libbsd0/now 0.12.1-1build1.1 arm64 [installed,local]
libbz2-1.0/now 1.0.8-5.1build0.1 arm64 [installed,local]
libc-bin/now 2.39-0ubuntu8.4 arm64 [installed,local]
libc-dev-bin/now 2.39-0ubuntu8.4 arm64 [installed,local]
libc6-dev/now 2.39-0ubuntu8.4 arm64 [installed,local]
libc6/now 2.39-0ubuntu8.4 arm64 [installed,local]
libcaca0/now 0.99.beta20-4build2 arm64 [installed,local]
libcairo-gobject2/now 1.18.0-3build1 arm64 [installed,local]
libcairo2/now 1.18.0-3build1 arm64 [installed,local]
libcap-ng0/now 0.8.4-2build2 arm64 [installed,local]
libcap2/now 1:2.66-5ubuntu2.2 arm64 [installed,local]
libcbor0.10/now 0.10.2-1.2ubuntu2 arm64 [installed,local]
libcc1-0/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libcdio-cdda2t64/now 10.2+2.0.1-1.1build2 arm64 [installed,local]
libcdio-paranoia2t64/now 10.2+2.0.1-1.1build2 arm64 [installed,local]
libcdio19t64/now 2.1.0-4.1ubuntu1.2 arm64 [installed,local]
libchromaprint1/now 1.5.1-5 arm64 [installed,local]
libcjson1/now 1.7.17-1 arm64 [installed,local]
libcodec2-1.2/now 1.2.0-2build1 arm64 [installed,local]
libcom-err2/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libcommons-logging-java/now 1.3.0-1ubuntu1 all [installed,local]
libcommons-parent-java/now 56-1 all [installed,local]
libcrypt-dev/now 1:4.4.36-4build1 arm64 [installed,local]
libcrypt1/now 1:4.4.36-4build1 arm64 [installed,local]
libctf-nobfd0/now 2.42-4ubuntu2.5 arm64 [installed,local]
libctf0/now 2.42-4ubuntu2.5 arm64 [installed,local]
libcups2t64/now 2.4.7-1.2ubuntu7.3 arm64 [installed,local]
libcurl3t64-gnutls/now 8.5.0-2ubuntu10.6 arm64 [installed,local]
libcurl4t64/now 8.5.0-2ubuntu10.6 arm64 [installed,local]
libdatrie1/now 0.2.13-3build1 arm64 [installed,local]
libdav1d7/now 1.4.1-1build1 arm64 [installed,local]
libdb5.3t64/now 5.3.28+dfsg2-7 arm64 [installed,local]
libdbus-1-3/now 1.14.10-4ubuntu4.1 arm64 [installed,local]
libdc1394-25/now 2.2.6-4build1 arm64 [installed,local]
libde265-0/now 1.0.15-1build3 arm64 [installed,local]
libdebconfclient0/now 0.271ubuntu3 arm64 [installed,local]
libdecor-0-0/now 0.2.2-1build2 arm64 [installed,local]
libdeflate0/now 1.19-1build1.1 arm64 [installed,local]
libdpkg-perl/now 1.22.6ubuntu6.1 all [installed,local]
libdrm-amdgpu1/now 2.4.122-1~ubuntu0.24.04.1 arm64 [installed,local]
libdrm-common/now 2.4.122-1~ubuntu0.24.04.1 all [installed,local]
libdrm-radeon1/now 2.4.122-1~ubuntu0.24.04.1 arm64 [installed,local]
libdrm2/now 2.4.122-1~ubuntu0.24.04.1 arm64 [installed,local]
libedit2/now 3.1-20230828-1build1 arm64 [installed,local]
libelf1t64/now 0.190-1.1ubuntu0.1 arm64 [installed,local]
liberror-perl/now 0.17029-2 all [installed,local]
libexpat1/now 2.6.1-2ubuntu0.3 arm64 [installed,local]
libext2fs2t64/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libffi8/now 3.4.6-1build1 arm64 [installed,local]
libfftw3-double3/now 3.3.10-1ubuntu3 arm64 [installed,local]
libfido2-1/now 1.14.0-1build3 arm64 [installed,local]
libflac12t64/now 1.4.3+ds-2.1ubuntu2 arm64 [installed,local]
libflite1/now 2.2-6build3 arm64 [installed,local]
libfontbox-java/now 1:1.8.16-5 all [installed,local]
libfontconfig1/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
libfontenc1/now 1:1.1.8-1build1 arm64 [installed,local]
libfreetype6/now 2.13.2+dfsg-1build3 arm64 [installed,local]
libfribidi0/now 1.0.13-3build1 arm64 [installed,local]
libgbm1/now 24.2.8-1ubuntu1~24.04.1 arm64 [installed,local]
libgcc-13-dev/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
libgcc-s1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libgcrypt20/now 1.10.3-2build1 arm64 [installed,local]
libgd3/now 2.3.3-9ubuntu5 arm64 [installed,local]
libgdbm-compat4t64/now 1.23-5.1build1 arm64 [installed,local]
libgdbm6t64/now 1.23-5.1build1 arm64 [installed,local]
libgdk-pixbuf-2.0-0/now 2.42.10+dfsg-3ubuntu3.1 arm64 [installed,local]
libgdk-pixbuf2.0-common/now 2.42.10+dfsg-3ubuntu3.1 all [installed,local]
libgfortran-13-dev/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
libgfortran5/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libgl1-mesa-dri/now 24.2.8-1ubuntu1~24.04.1 arm64 [installed,local]
libgl1/now 1.7.0-1build1 arm64 [installed,local]
libglapi-mesa/now 24.2.8-1ubuntu1~24.04.1 arm64 [installed,local]
libglib2.0-0t64/now 2.80.0-6ubuntu3.2 arm64 [installed,local]
libglvnd0/now 1.7.0-1build1 arm64 [installed,local]
libglx-mesa0/now 24.2.8-1ubuntu1~24.04.1 arm64 [installed,local]
libglx0/now 1.7.0-1build1 arm64 [installed,local]
libgme0/now 0.6.3-7build1 arm64 [installed,local]
libgmp10/now 2:6.3.0+dfsg-2ubuntu6.1 arm64 [installed,local]
libgnutls30t64/now 3.8.3-1.1ubuntu3.3 arm64 [installed,local]
libgomp1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libgpg-error0/now 1.47-3build2.1 arm64 [installed,local]
libgprofng0/now 2.42-4ubuntu2.5 arm64 [installed,local]
libgraphite2-3/now 1.3.14-2build1 arm64 [installed,local]
libgs-common/now 10.02.1~dfsg1-0ubuntu7.6 all [installed,local]
libgs10-common/now 10.02.1~dfsg1-0ubuntu7.6 all [installed,local]
libgs10/now 10.02.1~dfsg1-0ubuntu7.6 arm64 [installed,local]
libgsm1/now 1.0.22-1build1 arm64 [installed,local]
libgssapi-krb5-2/now 1.20.1-6ubuntu2.5 arm64 [installed,local]
libharfbuzz0b/now 8.3.0-2build2 arm64 [installed,local]
libheif-plugin-aomdec/now 1.17.6-1ubuntu4.1 arm64 [installed,local]
libheif-plugin-libde265/now 1.17.6-1ubuntu4.1 arm64 [installed,local]
libheif1/now 1.17.6-1ubuntu4.1 arm64 [installed,local]
libhogweed6t64/now 3.9.1-2.2build1.1 arm64 [installed,local]
libhwasan0/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libhwy1t64/now 1.0.7-8.1build1 arm64 [installed,local]
libice6/now 2:1.0.10-1build3 arm64 [installed,local]
libicu74/now 74.2-1ubuntu3.1 arm64 [installed,local]
libidn12/now 1.42-1build1 arm64 [installed,local]
libidn2-0/now 2.3.7-2build1.1 arm64 [installed,local]
libiec61883-0/now 1.2.0-6build1 arm64 [installed,local]
libijs-0.35/now 0.35-15.1build1 arm64 [installed,local]
libisl23/now 0.26-3build1.1 arm64 [installed,local]
libitm1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libjack-jackd2-0/now 1.9.21~dfsg-3ubuntu3 arm64 [installed,local]
libjansson4/now 2.14-2build2 arm64 [installed,local]
libjbig0/now 2.1-6.1ubuntu2 arm64 [installed,local]
libjbig2dec0/now 0.20-1build3 arm64 [installed,local]
libjpeg-turbo8/now 2.1.5-2ubuntu2 arm64 [installed,local]
libjpeg8/now 8c-2ubuntu11 arm64 [installed,local]
libjxl0.7/now 0.7.0-10.2ubuntu6 arm64 [installed,local]
libk5crypto3/now 1.20.1-6ubuntu2.5 arm64 [installed,local]
libkeyutils1/now 1.6.3-3build1 arm64 [installed,local]
libkpathsea6/now 2023.20230311.66589-9build3 arm64 [installed,local]
libkrb5-3/now 1.20.1-6ubuntu2.5 arm64 [installed,local]
libkrb5support0/now 1.20.1-6ubuntu2.5 arm64 [installed,local]
liblapack3/now 3.12.0-3build1.1 arm64 [installed,local]
liblcms2-2/now 2.14-2build1 arm64 [installed,local]
libldap2/now 2.6.7+dfsg-1~exp1ubuntu8.2 arm64 [installed,local]
liblerc4/now 4.0.0+ds-4ubuntu2 arm64 [installed,local]
liblilv-0-0/now 0.24.22-1build1 arm64 [installed,local]
libllvm19/now 1:19.1.1-1ubuntu1~24.04.2 arm64 [installed,local]
liblsan0/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
liblua5.4-0/now 5.4.6-3build2 arm64 [installed,local]
liblz4-1/now 1.9.4-1build1.1 arm64 [installed,local]
liblzma5/now 5.6.1+really5.4.5-1ubuntu0.2 arm64 [installed,local]
libmbedcrypto7t64/now 2.28.8-1 arm64 [installed,local]
libmd0/now 1.1.0-2build1.1 arm64 [installed,local]
libmount1/now 2.39.3-9ubuntu6.2 arm64 [installed,local]
libmp3lame0/now 3.100-6build1 arm64 [installed,local]
libmpc3/now 1.3.1-1build1.1 arm64 [installed,local]
libmpfr6/now 4.2.1-1build1.1 arm64 [installed,local]
libmpg123-0t64/now 1.32.5-1ubuntu1.1 arm64 [installed,local]
libmysofa1/now 1.3.2+dfsg-2ubuntu2 arm64 [installed,local]
libncursesw6/now 6.4+20240113-1ubuntu2 arm64 [installed,local]
libnettle8t64/now 3.9.1-2.2build1.1 arm64 [installed,local]
libnghttp2-14/now 1.59.0-1ubuntu0.2 arm64 [installed,local]
libnorm1t64/now 1.5.9+dfsg-3.1build1 arm64 [installed,local]
libnpth0t64/now 1.6-3.1build1 arm64 [installed,local]
libnuma1/now 2.0.18-1build1 arm64 [installed,local]
libogg0/now 1.3.5-3build1 arm64 [installed,local]
libopenal-data/now 1:1.23.1-4build1 all [installed,local]
libopenal1/now 1:1.23.1-4build1 arm64 [installed,local]
libopenjp2-7/now 2.5.0-2ubuntu0.3 arm64 [installed,local]
libopenmpt0t64/now 0.7.3-1.1build3 arm64 [installed,local]
libopus0/now 1.4-1build1 arm64 [installed,local]
libp11-kit0/now 0.25.3-4ubuntu2.1 arm64 [installed,local]
libpam-modules-bin/now 1.5.3-5ubuntu5.1 arm64 [installed,local]
libpam-modules/now 1.5.3-5ubuntu5.1 arm64 [installed,local]
libpam-runtime/now 1.5.3-5ubuntu5.1 all [installed,local]
libpam0g/now 1.5.3-5ubuntu5.1 arm64 [installed,local]
libpango-1.0-0/now 1.52.1+ds-1build1 arm64 [installed,local]
libpangocairo-1.0-0/now 1.52.1+ds-1build1 arm64 [installed,local]
libpangoft2-1.0-0/now 1.52.1+ds-1build1 arm64 [installed,local]
libpaper-utils/now 1.1.29build1 arm64 [installed,local]
libpaper1/now 1.1.29build1 arm64 [installed,local]
libpcre2-8-0/now 10.42-4ubuntu2.1 arm64 [installed,local]
libpdfbox-java/now 1:1.8.16-5 all [installed,local]
libperl5.38t64/now 5.38.2-3.2ubuntu0.1 arm64 [installed,local]
libpgm-5.3-0t64/now 5.3.128~dfsg-2.1build1 arm64 [installed,local]
libpixman-1-0/now 0.42.2-1build1 arm64 [installed,local]
libplacebo338/now 6.338.2-2build1 arm64 [installed,local]
libpng16-16t64/now 1.6.43-5build1 arm64 [installed,local]
libpocketsphinx3/now 0.8.0+real5prealpha+1-15ubuntu5 arm64 [installed,local]
libpostproc57/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libpotrace0/now 1.16-2build1 arm64 [installed,local]
libproc2-0/now 2:4.0.4-4ubuntu3.2 arm64 [installed,local]
libpsl5t64/now 0.21.2-1.1build1 arm64 [installed,local]
libptexenc1/now 2023.20230311.66589-9build3 arm64 [installed,local]
libpulse0/now 1:16.1+dfsg1-2ubuntu10.1 arm64 [installed,local]
libpython3-stdlib/now 3.12.3-0ubuntu2 arm64 [installed,local]
libpython3.12-minimal/now 3.12.3-1ubuntu0.5 arm64 [installed,local]
libpython3.12-stdlib/now 3.12.3-1ubuntu0.5 arm64 [installed,local]
librabbitmq4/now 0.11.0-1build2 arm64 [installed,local]
librav1e0/now 0.7.1-2 arm64 [installed,local]
libraw1394-11/now 2.1.2-2build3 arm64 [installed,local]
libreadline8t64/now 8.2-4build1 arm64 [installed,local]
librist4/now 0.2.10+dfsg-2 arm64 [installed,local]
librsvg2-2/now 2.58.0+dfsg-1build1 arm64 [installed,local]
librtmp1/now 2.4+20151223.gitfa8646d.1-2build7 arm64 [installed,local]
librubberband2/now 3.3.0+dfsg-2build1 arm64 [installed,local]
libsamplerate0/now 0.2.2-4build1 arm64 [installed,local]
libsasl2-2/now 2.1.28+dfsg1-5ubuntu3.1 arm64 [installed,local]
libsasl2-modules-db/now 2.1.28+dfsg1-5ubuntu3.1 arm64 [installed,local]
libsdl2-2.0-0/now 2.30.0+dfsg-1ubuntu3.1 arm64 [installed,local]
libseccomp2/now 2.5.5-1ubuntu3.1 arm64 [installed,local]
libselinux1/now 3.5-2ubuntu2.1 arm64 [installed,local]
libsemanage-common/now 3.5-1build5 all [installed,local]
libsemanage2/now 3.5-1build5 arm64 [installed,local]
libsensors-config/now 1:3.6.0-9build1 all [installed,local]
libsensors5/now 1:3.6.0-9build1 arm64 [installed,local]
libsepol2/now 3.5-2build1 arm64 [installed,local]
libserd-0-0/now 0.32.2-1 arm64 [installed,local]
libsframe1/now 2.42-4ubuntu2.5 arm64 [installed,local]
libsharpyuv0/now 1.3.2-0.4build3 arm64 [installed,local]
libshine3/now 3.1.1-2build1 arm64 [installed,local]
libslang2/now 2.3.3-3build2 arm64 [installed,local]
libsm6/now 2:1.2.3-1build3 arm64 [installed,local]
libsmartcols1/now 2.39.3-9ubuntu6.2 arm64 [installed,local]
libsnappy1v5/now 1.1.10-1build1 arm64 [installed,local]
libsndfile1/now 1.2.2-1ubuntu5.24.04.1 arm64 [installed,local]
libsndio7.0/now 1.9.0-0.3build3 arm64 [installed,local]
libsodium23/now 1.0.18-1build3 arm64 [installed,local]
libsord-0-0/now 0.16.16-2build1 arm64 [installed,local]
libsoxr0/now 0.1.3-4build3 arm64 [installed,local]
libspeex1/now 1.2.1-2ubuntu2.24.04.1 arm64 [installed,local]
libsphinxbase3t64/now 0.8+5prealpha+1-17build2 arm64 [installed,local]
libsqlite3-0/now 3.45.1-1ubuntu2.1 arm64 [installed,local]
libsratom-0-0/now 0.6.16-1build1 arm64 [installed,local]
libsrt1.5-gnutls/now 1.5.3-1build2 arm64 [installed,local]
libss2/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libssh-4/now 0.10.6-2build2 arm64 [installed,local]
libssh-gcrypt-4/now 0.10.6-2build2 arm64 [installed,local]
libssl3t64/now 3.0.13-0ubuntu3.5 arm64 [installed,local]
libstdc++-13-dev/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
libstdc++6/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libsvtav1enc1d1/now 1.7.0+dfsg-2build1 arm64 [installed,local]
libswresample4/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libswscale7/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libsynctex2/now 2023.20230311.66589-9build3 arm64 [installed,local]
libsystemd0/now 255.4-1ubuntu8.6 arm64 [installed,local]
libtasn1-6/now 4.19.0-3ubuntu0.24.04.1 arm64 [installed,local]
libteckit0/now 2.5.12+ds1-1 arm64 [installed,local]
libtexlua53-5/now 2023.20230311.66589-9build3 arm64 [installed,local]
libthai-data/now 0.1.29-2build1 all [installed,local]
libthai0/now 0.1.29-2build1 arm64 [installed,local]
libtheora0/now 1.1.1+dfsg.1-16.1build3 arm64 [installed,local]
libtiff6/now 4.5.1+git230720-4ubuntu2.2 arm64 [installed,local]
libtinfo6/now 6.4+20240113-1ubuntu2 arm64 [installed,local]
libtsan2/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libtwolame0/now 0.4.0-2build3 arm64 [installed,local]
libubsan1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libudev1/now 255.4-1ubuntu8.6 arm64 [installed,local]
libudfread0/now 1.1.2-1build1 arm64 [installed,local]
libunibreak5/now 5.1-2build1 arm64 [installed,local]
libunistring5/now 1.1-2build1.1 arm64 [installed,local]
libusb-1.0-0/now 2:1.0.27-1 arm64 [installed,local]
libuuid1/now 2.39.3-9ubuntu6.2 arm64 [installed,local]
libva-drm2/now 2.20.0-2build1 arm64 [installed,local]
libva-x11-2/now 2.20.0-2build1 arm64 [installed,local]
libva2/now 2.20.0-2build1 arm64 [installed,local]
libvdpau1/now 1.5-2build1 arm64 [installed,local]
libvidstab1.1/now 1.1.0-2build1 arm64 [installed,local]
libvorbis0a/now 1.3.7-1build3 arm64 [installed,local]
libvorbisenc2/now 1.3.7-1build3 arm64 [installed,local]
libvorbisfile3/now 1.3.7-1build3 arm64 [installed,local]
libvpx9/now 1.14.0-1ubuntu2.1 arm64 [installed,local]
libvulkan1/now 1.3.275.0-1build1 arm64 [installed,local]
libwayland-client0/now 1.22.0-2.1build1 arm64 [installed,local]
libwayland-cursor0/now 1.22.0-2.1build1 arm64 [installed,local]
libwayland-egl1/now 1.22.0-2.1build1 arm64 [installed,local]
libwayland-server0/now 1.22.0-2.1build1 arm64 [installed,local]
libwebp7/now 1.3.2-0.4build3 arm64 [installed,local]
libwebpmux3/now 1.3.2-0.4build3 arm64 [installed,local]
libx11-6/now 2:1.8.7-1build1 arm64 [installed,local]
libx11-data/now 2:1.8.7-1build1 all [installed,local]
libx11-xcb1/now 2:1.8.7-1build1 arm64 [installed,local]
libx264-164/now 2:0.164.3108+git31e19f9-1 arm64 [installed,local]
libx265-199/now 3.5-2build1 arm64 [installed,local]
libxau6/now 1:1.0.9-1build6 arm64 [installed,local]
libxaw7/now 2:1.0.14-1build2 arm64 [installed,local]
libxcb-dri2-0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-dri3-0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-glx0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-present0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-randr0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-render0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-shape0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-shm0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-sync1/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-xfixes0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb1/now 1.15-1ubuntu2 arm64 [installed,local]
libxcursor1/now 1:1.2.1-1build1 arm64 [installed,local]
libxdmcp6/now 1:1.1.3-0ubuntu6 arm64 [installed,local]
libxext6/now 2:1.3.4-1build2 arm64 [installed,local]
libxfixes3/now 1:6.0.0-2build1 arm64 [installed,local]
libxi6/now 2:1.8.1-1build1 arm64 [installed,local]
libxkbcommon0/now 1.6.0-1build1 arm64 [installed,local]
libxml2/now 2.9.14+dfsg-1.3ubuntu3.3 arm64 [installed,local]
libxmu6/now 2:1.1.3-3build2 arm64 [installed,local]
libxpm4/now 1:3.5.17-1build2 arm64 [installed,local]
libxrandr2/now 2:1.5.2-2build1 arm64 [installed,local]
libxrender1/now 1:0.9.10-1.1build1 arm64 [installed,local]
libxshmfence1/now 1.3-1build5 arm64 [installed,local]
libxss1/now 1:1.2.3-1build3 arm64 [installed,local]
libxt6t64/now 1:1.2.1-1.2build1 arm64 [installed,local]
libxv1/now 2:1.0.11-1.1build1 arm64 [installed,local]
libxvidcore4/now 2:1.3.7-1build1 arm64 [installed,local]
libxxf86vm1/now 1:1.1.4-1build4 arm64 [installed,local]
libxxhash0/now 0.8.2-2build1 arm64 [installed,local]
libyaml-0-2/now 0.2.5-1build1 arm64 [installed,local]
libzimg2/now 3.0.5+ds1-1build1 arm64 [installed,local]
libzix-0-0/now 0.4.2-2build1 arm64 [installed,local]
libzmq5/now 4.3.5-1build2 arm64 [installed,local]
libzstd1/now 1.5.5+dfsg2-2build1.1 arm64 [installed,local]
libzvbi-common/now 0.2.42-2 all [installed,local]
libzvbi0t64/now 0.2.42-2 arm64 [installed,local]
libzzip-0-13t64/now 0.13.72+dfsg.1-1.2build1 arm64 [installed,local]
linux-libc-dev/now 6.8.0-59.61 arm64 [installed,local]
locales/now 2.39-0ubuntu8.4 all [installed,local]
login/now 1:4.13+dfsg1-4ubuntu3.2 arm64 [installed,local]
logsave/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
lto-disabled-list/now 47 all [installed,local]
make/now 4.3-4.1build2 arm64 [installed,local]
mawk/now 1.3.4.20240123-1build1 arm64 [installed,local]
media-types/now 10.1.0 all [installed,local]
mesa-libgallium/now 24.2.8-1ubuntu1~24.04.1 arm64 [installed,local]
mount/now 2.39.3-9ubuntu6.2 arm64 [installed,local]
nano-tiny/now 7.2-2ubuntu0.1 arm64 [installed,local]
ncurses-base/now 6.4+20240113-1ubuntu2 all [installed,local]
ncurses-bin/now 6.4+20240113-1ubuntu2 arm64 [installed,local]
netbase/now 6.4 all [installed,local]
ocl-icd-libopencl1/now 2.3.2-1build1 arm64 [installed,local]
openssh-client/now 1:9.6p1-3ubuntu13.11 arm64 [installed,local]
openssl/now 3.0.13-0ubuntu3.5 arm64 [installed,local]
pandoc-data/now 3.1.3-1 all [installed,local]
pandoc/now 3.1.3+ds-2 arm64 [installed,local]
passwd/now 1:4.13+dfsg1-4ubuntu3.2 arm64 [installed,local]
patch/now 2.7.6-7build3 arm64 [installed,local]
perl-base/now 5.38.2-3.2ubuntu0.1 arm64 [installed,local]
perl-modules-5.38/now 5.38.2-3.2ubuntu0.1 all [installed,local]
perl/now 5.38.2-3.2ubuntu0.1 arm64 [installed,local]
pfb2t1c2pfb/now 0.3-11build1 arm64 [installed,local]
poppler-data/now 0.4.12-1 all [installed,local]
preview-latex-style/now 13.2-1 all [installed,local]
procps/now 2:4.0.4-4ubuntu3.2 arm64 [installed,local]
python3-minimal/now 3.12.3-0ubuntu2 arm64 [installed,local]
python3.12-minimal/now 3.12.3-1ubuntu0.5 arm64 [installed,local]
python3.12/now 3.12.3-1ubuntu0.5 arm64 [installed,local]
python3/now 3.12.3-0ubuntu2 arm64 [installed,local]
readline-common/now 8.2-4build1 all [installed,local]
rpcsvc-proto/now 1.4.2-0ubuntu7 arm64 [installed,local]
run-one/now 1.17-0ubuntu2 all [installed,local]
sed/now 4.9-2build1 arm64 [installed,local]
sensible-utils/now 0.0.22 all [installed,local]
shared-mime-info/now 2.4-4 arm64 [installed,local]
sudo/now 1.9.15p5-3ubuntu5 arm64 [installed,local]
sysvinit-utils/now 3.08-6ubuntu3 arm64 [installed,local]
t1utils/now 1.41-4build3 arm64 [installed,local]
tar/now 1.35+dfsg-3build1 arm64 [installed,local]
teckit/now 2.5.12+ds1-1 arm64 [installed,local]
tex-common/now 6.18 all [installed,local]
texlive-base/now 2023.20240207-1 all [installed,local]
texlive-binaries/now 2023.20230311.66589-9build3 arm64 [installed,local]
texlive-fonts-recommended/now 2023.20240207-1 all [installed,local]
texlive-latex-base/now 2023.20240207-1 all [installed,local]
texlive-latex-extra/now 2023.20240207-1 all [installed,local]
texlive-latex-recommended/now 2023.20240207-1 all [installed,local]
texlive-pictures/now 2023.20240207-1 all [installed,local]
texlive-plain-generic/now 2023.20240207-1 all [installed,local]
texlive-xetex/now 2023.20240207-1 all [installed,local]
tini/now 0.19.0-1 arm64 [installed,local]
tipa/now 2:1.3-21 all [installed,local]
tzdata/now 2025b-0ubuntu0.24.04 all [installed,local]
ubuntu-keyring/now 2023.11.28.1 all [installed,local]
ucf/now 3.0043+nmu1 all [installed,local]
unminimize/now 0.2.1 arm64 [installed,local]
unzip/now 6.0-28ubuntu4.1 arm64 [installed,local]
util-linux/now 2.39.3-9ubuntu6.2 arm64 [installed,local]
vim-common/now 2:9.1.0016-1ubuntu7.8 all [installed,local]
vim-tiny/now 2:9.1.0016-1ubuntu7.8 arm64 [installed,local]
wget/now 1.21.4-1ubuntu4.1 arm64 [installed,local]
x11-common/now 1:7.7+23ubuntu3 all [installed,local]
xclip/now 0.13-3 arm64 [installed,local]
xdg-utils/now 1.1.3-4.1ubuntu3 all [installed,local]
xfonts-encodings/now 1:1.0.5-0ubuntu2 all [installed,local]
xfonts-utils/now 1:7.7+6build3 arm64 [installed,local]
xkb-data/now 2.41-2ubuntu1.1 all [installed,local]
xz-utils/now 5.6.1+really5.4.5-1ubuntu0.2 arm64 [installed,local]
zlib1g/now 1:1.3.dfsg-3.1ubuntu2.1 arm64 [installed,local]

R Packages

R --version:

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-conda-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.

R --silent -e 'installed.packages(.Library)[, c(1,3)]':

> installed.packages(.Library)[, c(1,3)]
                     Package                Version
abind                "abind"                "1.4-5"
affy                 "affy"                 "1.84.0"
affyio               "affyio"               "1.76.0"
annotate             "annotate"             "1.84.0"
AnnotationDbi        "AnnotationDbi"        "1.68.0"
AnnotationFilter     "AnnotationFilter"     "1.30.0"
AnnotationHub        "AnnotationHub"        "3.14.0"
ape                  "ape"                  "5.8-1"
apeglm               "apeglm"               "1.28.0"
aplot                "aplot"                "0.2.5"
ashr                 "ashr"                 "2.2-63"
askpass              "askpass"              "1.2.1"
assertthat           "assertthat"           "0.2.1"
assorthead           "assorthead"           "1.0.0"
backports            "backports"            "1.5.0"
base                 "base"                 "4.4.3"
base64enc            "base64enc"            "0.1-3"
basilisk             "basilisk"             "1.18.0"
basilisk.utils       "basilisk.utils"       "1.18.0"
bbmle                "bbmle"                "1.0.25.1"
bdsmatrix            "bdsmatrix"            "1.3-7"
beachmat             "beachmat"             "2.22.0"
BH                   "BH"                   "1.87.0-1"
Biobase              "Biobase"              "2.66.0"
BiocFileCache        "BiocFileCache"        "2.14.0"
BiocGenerics         "BiocGenerics"         "0.52.0"
BiocIO               "BiocIO"               "1.16.0"
BiocManager          "BiocManager"          "1.30.25"
BiocParallel         "BiocParallel"         "1.40.0"
BiocSingular         "BiocSingular"         "1.22.0"
BiocVersion          "BiocVersion"          "3.20.0"
biomaRt              "biomaRt"              "2.62.0"
Biostrings           "Biostrings"           "2.74.0"
bit                  "bit"                  "4.6.0"
bit64                "bit64"                "4.6.0-1"
bitops               "bitops"               "1.0-9"
blob                 "blob"                 "1.2.4"
boot                 "boot"                 "1.3-31"
brew                 "brew"                 "1.0-10"
brio                 "brio"                 "1.1.5"
broom                "broom"                "1.0.8"
broom.helpers        "broom.helpers"        "1.21.0"
bslib                "bslib"                "0.9.0"
cachem               "cachem"               "1.1.0"
callr                "callr"                "3.7.6"
car                  "car"                  "3.1-3"
carData              "carData"              "3.0-5"
cards                "cards"                "0.6.0"
caret                "caret"                "6.0-94"
cellranger           "cellranger"           "1.1.0"
circlize             "circlize"             "0.4.16"
class                "class"                "7.3-23"
cli                  "cli"                  "3.6.5"
clipr                "clipr"                "0.8.0"
clock                "clock"                "0.7.3"
clue                 "clue"                 "0.3-66"
cluster              "cluster"              "2.1.8.1"
clusterProfiler      "clusterProfiler"      "4.14.0"
coda                 "coda"                 "0.19-4.1"
codetools            "codetools"            "0.2-20"
collections          "collections"          "0.3.7"
colorspace           "colorspace"           "2.1-1"
commonmark           "commonmark"           "1.9.5"
compiler             "compiler"             "4.4.3"
ComplexHeatmap       "ComplexHeatmap"       "2.22.0"
conflicted           "conflicted"           "1.2.0"
conquer              "conquer"              "1.3.3"
corrplot             "corrplot"             "0.95"
cowplot              "cowplot"              "1.1.3"
cpp11                "cpp11"                "0.5.2"
crayon               "crayon"               "1.5.3"
credentials          "credentials"          "2.0.2"
crosstalk            "crosstalk"            "1.2.1"
curl                 "curl"                 "6.2.2"
cyclocomp            "cyclocomp"            "1.1.1"
data.table           "data.table"           "1.17.0"
datasets             "datasets"             "4.4.3"
DBI                  "DBI"                  "1.2.3"
dbplyr               "dbplyr"               "2.5.0"
DelayedArray         "DelayedArray"         "0.32.0"
DelayedMatrixStats   "DelayedMatrixStats"   "1.28.0"
dendextend           "dendextend"           "1.19.0"
Deriv                "Deriv"                "4.1.6"
desc                 "desc"                 "1.4.3"
DESeq2               "DESeq2"               "1.46.0"
devtools             "devtools"             "2.4.5"
diagram              "diagram"              "1.6.5"
dials                "dials"                "1.4.0"
DiceDesign           "DiceDesign"           "1.10"
diffobj              "diffobj"              "0.3.6"
digest               "digest"               "0.6.37"
dir.expiry           "dir.expiry"           "1.14.0"
doBy                 "doBy"                 "4.6.26"
doFuture             "doFuture"             "1.0.2"
doParallel           "doParallel"           "1.0.17"
DOSE                 "DOSE"                 "4.0.0"
downlit              "downlit"              "0.4.4"
dplyr                "dplyr"                "1.1.4"
dtplyr               "dtplyr"               "1.3.1"
e1071                "e1071"                "1.7-16"
ellipsis             "ellipsis"             "0.3.2"
emdbook              "emdbook"              "1.3.13"
enrichplot           "enrichplot"           "1.26.1"
ensembldb            "ensembldb"            "2.30.0"
etrunct              "etrunct"              "0.1"
evaluate             "evaluate"             "1.0.3"
fansi                "fansi"                "1.0.6"
farver               "farver"               "2.1.2"
fastmap              "fastmap"              "1.2.0"
fastmatch            "fastmatch"            "1.1-6"
fgsea                "fgsea"                "1.32.2"
filelock             "filelock"             "1.0.3"
fontawesome          "fontawesome"          "0.5.3"
forcats              "forcats"              "1.0.0"
foreach              "foreach"              "1.5.2"
forecast             "forecast"             "8.24.0"
formatR              "formatR"              "1.14"
Formula              "Formula"              "1.2-5"
fracdiff             "fracdiff"             "1.5-3"
fs                   "fs"                   "1.6.6"
furrr                "furrr"                "0.3.1"
futile.logger        "futile.logger"        "1.4.3"
futile.options       "futile.options"       "1.0.1"
future               "future"               "1.40.0"
future.apply         "future.apply"         "1.11.3"
gargle               "gargle"               "1.5.2"
gbRd                 "gbRd"                 "0.4.12"
generics             "generics"             "0.1.3"
GenomeInfoDb         "GenomeInfoDb"         "1.42.0"
GenomeInfoDbData     "GenomeInfoDbData"     "1.2.13"
GenomicAlignments    "GenomicAlignments"    "1.42.0"
GenomicFeatures      "GenomicFeatures"      "1.58.0"
GenomicRanges        "GenomicRanges"        "1.58.0"
gert                 "gert"                 "2.1.4"
GetoptLong           "GetoptLong"           "1.0.5"
GGally               "GGally"               "2.2.1"
ggforce              "ggforce"              "0.4.2"
ggfun                "ggfun"                "0.1.8"
ggnewscale           "ggnewscale"           "0.5.1"
ggplot2              "ggplot2"              "3.5.2"
ggplotify            "ggplotify"            "0.1.2"
ggpubr               "ggpubr"               "0.6.0"
ggraph               "ggraph"               "2.2.1"
ggrepel              "ggrepel"              "0.9.6"
ggsci                "ggsci"                "3.2.0"
ggsignif             "ggsignif"             "0.6.4"
ggstats              "ggstats"              "0.9.0"
ggtangle             "ggtangle"             "0.0.6"
ggtree               "ggtree"               "3.14.0"
gh                   "gh"                   "1.4.1"
gitcreds             "gitcreds"             "0.1.2"
glmGamPoi            "glmGamPoi"            "1.18.0"
GlobalOptions        "GlobalOptions"        "0.1.2"
globals              "globals"              "0.17.0"
glue                 "glue"                 "1.8.0"
GO.db                "GO.db"                "3.20.0"
googledrive          "googledrive"          "2.1.1"
googlesheets4        "googlesheets4"        "1.1.1"
GOSemSim             "GOSemSim"             "2.32.0"
gower                "gower"                "1.0.1"
GPfit                "GPfit"                "1.0-9"
graph                "graph"                "1.84.0"
graphics             "graphics"             "4.4.3"
graphite             "graphite"             "1.52.0"
graphlayouts         "graphlayouts"         "1.2.2"
grDevices            "grDevices"            "4.4.3"
grid                 "grid"                 "4.4.3"
gridExtra            "gridExtra"            "2.3"
gridGraphics         "gridGraphics"         "0.5-1"
GSEABase             "GSEABase"             "1.68.0"
gson                 "gson"                 "0.1.0"
GSVA                 "GSVA"                 "2.0.0"
gtable               "gtable"               "0.3.6"
hardhat              "hardhat"              "1.4.1"
haven                "haven"                "2.5.4"
HDF5Array            "HDF5Array"            "1.34.0"
here                 "here"                 "1.0.1"
hexbin               "hexbin"               "1.28.5"
highr                "highr"                "0.11"
hms                  "hms"                  "1.1.3"
htmltools            "htmltools"            "0.5.8.1"
htmlwidgets          "htmlwidgets"          "1.6.4"
httpuv               "httpuv"               "1.6.15"
httr                 "httr"                 "1.4.7"
httr2                "httr2"                "1.1.2"
ids                  "ids"                  "1.0.1"
igraph               "igraph"               "2.0.3"
infer                "infer"                "1.0.8"
ini                  "ini"                  "0.3.1"
invgamma             "invgamma"             "1.1"
ipred                "ipred"                "0.9-15"
IRanges              "IRanges"              "2.40.0"
IRdisplay            "IRdisplay"            "1.1"
IRkernel             "IRkernel"             "1.3.2"
irlba                "irlba"                "2.3.5.1"
isoband              "isoband"              "0.2.7"
iterators            "iterators"            "1.0.14"
jquerylib            "jquerylib"            "0.1.4"
jsonlite             "jsonlite"             "2.0.0"
KEGGREST             "KEGGREST"             "1.46.0"
KernSmooth           "KernSmooth"           "2.23-26"
knitr                "knitr"                "1.50"
labeling             "labeling"             "0.4.3"
labelled             "labelled"             "2.14.0"
lambda.r             "lambda.r"             "1.2.4"
languageserver       "languageserver"       "0.3.16"
later                "later"                "1.4.2"
lattice              "lattice"              "0.22-7"
lava                 "lava"                 "1.8.1"
lazyeval             "lazyeval"             "0.2.2"
lhs                  "lhs"                  "1.2.0"
lifecycle            "lifecycle"            "1.0.4"
limma                "limma"                "3.62.1"
lintr                "lintr"                "3.2.0"
listenv              "listenv"              "0.9.1"
lme4                 "lme4"                 "1.1-37"
lmtest               "lmtest"               "0.9-40"
locfit               "locfit"               "1.5-9.12"
lubridate            "lubridate"            "1.9.4"
magick               "magick"               "2.8.6"
magrittr             "magrittr"             "2.0.3"
MASS                 "MASS"                 "7.3-64"
Matrix               "Matrix"               "1.7-3"
MatrixGenerics       "MatrixGenerics"       "1.18.0"
MatrixModels         "MatrixModels"         "0.5-4"
matrixStats          "matrixStats"          "1.5.0"
memoise              "memoise"              "2.0.1"
methods              "methods"              "4.4.3"
mgcv                 "mgcv"                 "1.9-3"
microbenchmark       "microbenchmark"       "1.5.0"
mime                 "mime"                 "0.13"
miniUI               "miniUI"               "0.1.2"
minqa                "minqa"                "1.2.8"
mixsqp               "mixsqp"               "0.3-54"
modeldata            "modeldata"            "1.4.0"
modelenv             "modelenv"             "0.2.0"
ModelMetrics         "ModelMetrics"         "1.2.2.2"
modelr               "modelr"               "0.1.11"
munsell              "munsell"              "0.5.1"
mvtnorm              "mvtnorm"              "1.3-3"
nlme                 "nlme"                 "3.1-168"
nloptr               "nloptr"               "2.2.1"
nnet                 "nnet"                 "7.3-20"
numDeriv             "numDeriv"             "2016.8-1.1"
nycflights13         "nycflights13"         "1.0.2"
openssl              "openssl"              "2.3.2"
org.Hs.eg.db         "org.Hs.eg.db"         "3.20.0"
org.Mm.eg.db         "org.Mm.eg.db"         "3.20.0"
parallel             "parallel"             "4.4.3"
parallelly           "parallelly"           "1.43.0"
parsnip              "parsnip"              "1.3.1"
patchwork            "patchwork"            "1.3.0"
pbdZMQ               "pbdZMQ"               "0.3-14"
pbkrtest             "pbkrtest"             "0.5.4"
pheatmap             "pheatmap"             "1.0.12"
pillar               "pillar"               "1.10.2"
pkgbuild             "pkgbuild"             "1.4.7"
pkgconfig            "pkgconfig"            "2.0.3"
pkgdown              "pkgdown"              "2.1.2"
pkgload              "pkgload"              "1.4.0"
plogr                "plogr"                "0.2.0"
plotly               "plotly"               "4.10.4"
plyr                 "plyr"                 "1.8.9"
png                  "png"                  "0.1-8"
polyclip             "polyclip"             "1.10-7"
polynom              "polynom"              "1.4-1"
praise               "praise"               "1.0.0"
preprocessCore       "preprocessCore"       "1.68.0"
prettyunits          "prettyunits"          "1.2.0"
pROC                 "pROC"                 "1.18.5"
processx             "processx"             "3.8.6"
prodlim              "prodlim"              "2025.04.28"
profvis              "profvis"              "0.4.0"
progress             "progress"             "1.2.3"
progressr            "progressr"            "0.15.1"
promises             "promises"             "1.3.2"
ProtGenerics         "ProtGenerics"         "1.38.0"
proxy                "proxy"                "0.4-27"
ps                   "ps"                   "1.9.1"
purrr                "purrr"                "1.0.4"
quadprog             "quadprog"             "1.5-8"
quantmod             "quantmod"             "0.4.27"
quantreg             "quantreg"             "6.1"
qvalue               "qvalue"               "2.38.0"
R.cache              "R.cache"              "0.17.0"
R.methodsS3          "R.methodsS3"          "1.8.2"
R.oo                 "R.oo"                 "1.27.1"
R.utils              "R.utils"              "2.13.0"
R6                   "R6"                   "2.6.1"
ragg                 "ragg"                 "1.4.0"
randomForest         "randomForest"         "4.7-1.2"
rappdirs             "rappdirs"             "0.3.3"
rbibutils            "rbibutils"            "2.3"
rcmdcheck            "rcmdcheck"            "1.4.0"
RColorBrewer         "RColorBrewer"         "1.1-3"
Rcpp                 "Rcpp"                 "1.0.14"
RcppArmadillo        "RcppArmadillo"        "14.4.2-1"
RcppEigen            "RcppEigen"            "0.3.4.0.2"
RcppNumerical        "RcppNumerical"        "0.6-0"
RcppTOML             "RcppTOML"             "0.2.3"
RCurl                "RCurl"                "1.98-1.16"
Rdpack               "Rdpack"               "2.6.4"
reactome.db          "reactome.db"          "1.89.0"
ReactomePA           "ReactomePA"           "1.50.0"
readr                "readr"                "2.1.5"
readxl               "readxl"               "1.4.5"
recipes              "recipes"              "1.3.0"
reformulas           "reformulas"           "0.4.1"
rematch              "rematch"              "2.0.0"
rematch2             "rematch2"             "2.1.2"
remotes              "remotes"              "2.5.0"
repr                 "repr"                 "1.1.7"
reprex               "reprex"               "2.1.1"
reshape2             "reshape2"             "1.4.4"
restfulr             "restfulr"             "0.0.15"
reticulate           "reticulate"           "1.42.0"
rex                  "rex"                  "1.2.1"
rhdf5                "rhdf5"                "2.50.0"
rhdf5filters         "rhdf5filters"         "1.18.0"
Rhdf5lib             "Rhdf5lib"             "1.28.0"
Rhtslib              "Rhtslib"              "3.2.0"
rjson                "rjson"                "0.2.23"
rlang                "rlang"                "1.1.6"
rmarkdown            "rmarkdown"            "2.29"
RobustRankAggreg     "RobustRankAggreg"     "1.2.1"
RODBC                "RODBC"                "1.3-25"
roxygen2             "roxygen2"             "7.3.2"
rpart                "rpart"                "4.1.24"
rprojroot            "rprojroot"            "2.0.4"
rsample              "rsample"              "1.3.0"
Rsamtools            "Rsamtools"            "2.22.0"
RSQLite              "RSQLite"              "2.3.11"
rstatix              "rstatix"              "0.7.2"
rstudioapi           "rstudioapi"           "0.17.1"
rsvd                 "rsvd"                 "1.0.5"
rtracklayer          "rtracklayer"          "1.66.0"
rversions            "rversions"            "2.1.2"
rvest                "rvest"                "1.0.4"
S4Arrays             "S4Arrays"             "1.6.0"
S4Vectors            "S4Vectors"            "0.44.0"
sass                 "sass"                 "0.4.10"
ScaledMatrix         "ScaledMatrix"         "1.14.0"
scales               "scales"               "1.4.0"
scatterpie           "scatterpie"           "0.2.4"
scuttle              "scuttle"              "1.16.0"
selectr              "selectr"              "0.4-2"
sessioninfo          "sessioninfo"          "1.2.3"
sfd                  "sfd"                  "0.1.0"
shape                "shape"                "1.4.6.1"
shiny                "shiny"                "1.10.0"
SingleCellExperiment "SingleCellExperiment" "1.28.0"
slider               "slider"               "0.3.2"
snow                 "snow"                 "0.4-4"
sourcetools          "sourcetools"          "0.1.7-1"
SparseArray          "SparseArray"          "1.6.0"
SparseM              "SparseM"              "1.84-2"
sparseMatrixStats    "sparseMatrixStats"    "1.18.0"
sparsevctrs          "sparsevctrs"          "0.3.3"
SpatialExperiment    "SpatialExperiment"    "1.16.0"
splines              "splines"              "4.4.3"
SQUAREM              "SQUAREM"              "2021.1"
statmod              "statmod"              "1.5.0"
stats                "stats"                "4.4.3"
stats4               "stats4"               "4.4.3"
stringi              "stringi"              "1.8.7"
stringr              "stringr"              "1.5.1"
styler               "styler"               "1.10.3"
SummarizedExperiment "SummarizedExperiment" "1.36.0"
survival             "survival"             "3.8-3"
sys                  "sys"                  "3.4.3"
systemfonts          "systemfonts"          "1.2.3"
tcltk                "tcltk"                "4.4.3"
testthat             "testthat"             "3.2.3"
textshaping          "textshaping"          "1.0.1"
tibble               "tibble"               "3.2.1"
tidygraph            "tidygraph"            "1.3.0"
tidymodels           "tidymodels"           "1.3.0"
tidyr                "tidyr"                "1.3.1"
tidyselect           "tidyselect"           "1.2.1"
tidytree             "tidytree"             "0.4.6"
tidyverse            "tidyverse"            "2.0.0"
timechange           "timechange"           "0.3.0"
timeDate             "timeDate"             "4041.110"
tinytex              "tinytex"              "0.57"
tools                "tools"                "4.4.3"
treeio               "treeio"               "1.30.0"
truncnorm            "truncnorm"            "1.0-9"
tseries              "tseries"              "0.10-58"
TTR                  "TTR"                  "0.24.4"
tune                 "tune"                 "1.3.0"
tweenr               "tweenr"               "2.0.3"
txdbmaker            "txdbmaker"            "1.2.0"
tximeta              "tximeta"              "1.24.0"
tximport             "tximport"             "1.34.0"
tzdb                 "tzdb"                 "0.5.0"
UCSC.utils           "UCSC.utils"           "1.2.0"
urca                 "urca"                 "1.3-4"
urlchecker           "urlchecker"           "1.0.1"
usethis              "usethis"              "3.1.0"
utf8                 "utf8"                 "1.2.5"
utils                "utils"                "4.4.3"
uuid                 "uuid"                 "1.2-1"
vctrs                "vctrs"                "0.6.5"
viridis              "viridis"              "0.6.5"
viridisLite          "viridisLite"          "0.4.2"
vroom                "vroom"                "1.6.5"
vsn                  "vsn"                  "3.74.0"
waldo                "waldo"                "0.6.1"
warp                 "warp"                 "0.2.1"
whisker              "whisker"              "0.4.1"
withr                "withr"                "3.0.2"
workflows            "workflows"            "1.2.0"
workflowsets         "workflowsets"         "1.1.0"
writexl              "writexl"              "1.5.4"
xfun                 "xfun"                 "0.52"
XML                  "XML"                  "3.99-0.17"
xml2                 "xml2"                 "1.3.8"
xmlparsedata         "xmlparsedata"         "1.0.5"
xopen                "xopen"                "1.0.1"
xtable               "xtable"               "1.8-4"
xts                  "xts"                  "0.14.1"
XVector              "XVector"              "0.46.0"
yaml                 "yaml"                 "2.3.10"
yardstick            "yardstick"            "1.3.2"
yulab.utils          "yulab.utils"          "0.2.0"
zellkonverter        "zellkonverter"        "1.16.0"
zip                  "zip"                  "2.3.2"
zlibbioc             "zlibbioc"             "1.52.0"
zoo                  "zoo"                  "1.8-14"
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