02c_annotation with run_dbcan

Created: July 16 2019

Updated: July 16 2019

Re-run dbcan on all bins so we have comparable results for all bins detected (even low quality ones). Filter out the low quality bins afterwards.

1. Call prodigal on all bins

bins=$(echo ls *fa)
for i in $bins; 
	do
		# run prodigial 
		prodigal -i bins/$i -o genes/${i%%.fa}_genes.fa -a proteins/${i%%.fa}_proteins.faa;
done

Copy proteins over to run_dbcan directory

2. Implement run_dbcan on all protein calls.

bins=$(echo *.faa)
for i in $bins; do 
 python run_dbcan.py $i protein --out_dir ${i%%.faa}_output --dia_cpu 24 --hmm_cpu 24 --hotpep_cpu 24;
done