SMRT Analysis Release Notes v2.2.0.p2 - dyim42/SMRT-Analysis GitHub Wiki

  • [Introduction] (#Intro)
  • [Installation] (#Install)
  • [Fixed Issues in v2.2.0.p2] (#Fixed)

Introduction

The SMRT® Analysis software suite performs assembly and variant detection analysis of sequencing data generated by the Pacific Biosciences® instrument.

Installation

For installation instructions, see SMRT® Analysis Software Installation.

Fixed Issues in v2.2.0.p2

  • Fixed an issue that caused Quiver jobs for large genomes to fail. (25124)
  • Fixed an issue that caused SMRT Pipe jobs to fail when trying to clean up temp files. (25074)
  • Fixed an issue where qstat could not be found in HGAP CeleraAssembler. (25055)
  • Fixed an issue that caused BLASR to fail if the SMRT Cell path included any white spaces. (25012)
  • Fixed an issue where Reads of Insert execution failed due to an operating system memory error. (25034)
  • Fixed an issue where SEYMOUR_HOME=/opt/smrtanalysis was still hard-coded for distributed jobs. (25076)
  • The deleted job service fail-orphans is now included in the installation. (25049)

###SMRT® Portal###

  • Fixed an issue where SMRT Portal did not start correctly on server reboot. (25067)
  • The About box now includes patch information. (25129)
  • When exporting metrics, the .csv output file is now organized with metrics as columns and jobs as rows. (25030)

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