Reference upgrades fail - dyim42/SMRT-Analysis GitHub Wiki

  1. An old reference entry with only headers contains refNNNNNN| patterns, such as:
>ref000001|ref000001
or
>ref000001

This still fails the upgrade script. Check the upgrade log for the names of failed references.

  1. Users had directory structures inside the repository for previous versions, such as:
myrepository/foo/
myrepository/foo/reference.info.xml
myrepository/foo/sequence/
myrepository/foo/sequence/foo.fasta
myrepository/foo/sequence/foo.fasta.*

This might confuse the upgrade script. Users might need to manually upgrade references in this layout.