PINTS Overview - dwong263/MAGIQ GitHub Wiki
Overview
PINTS (Prior Information Templates) is a program used to generate simulated semi-LASER 1 H-MRS prior information templates (basis sets). With PINTS program, you can:
- Create simulated basis sets using preloaded semi-LASER and LASER sequences at 3T, 7T, and 9.4T field strengths.
- Add pre-defined empirical macromolecule models to your basis sets.
- Visualize the simulated basis sets.
- Define relationships between shifts, amplitudes, and phases on the simulated basis sets and generate FITMAN compatible constraint files (*.cst).
- Based on the defined constraints, generate FITMAN compatible guess files (*.ges).
Layout
PINTS is organized in a tabbed format. The tabs represent the steps you need to complete to generate a simulated basis set.
Instructions for each tab are given below:
- Simulate
- Load Experiment
- Edit Metabolites
- Plot Metabolites
- Export Basis Set (This tab is no longer maintained and will be removed in a future release.)
- Generate Constraint File
- Generate Guess File