What is AptaSUITE? - drivenbyentropy/aptasuite GitHub Wiki

AptaSUITE is a platform independent implementation of multiple algorithms designed for the identification of aptamer candidate sequences and the analysis of the SELEX process per se.

AptaSUITE is designed to be scalable with both data size and CPU count while minimizing the memory footprint by providing fast, off-heap data structures and storage solutions.

In its core, AptaSUITE consists of a collection of APIs and corresponding implementations facilitating storage, retrieval, and manipulation of aptamer data (such as sequences, aptamer counts in individual selection cycles, structure information and more). On top of these core data structures, a number of previously published algorithms have been implemented. Currently, these are AptaPLEX, AptaSIM, AptaCLUSTER, and AptaTRACE.