rliB - dictyBase/community-annotations GitHub Wiki
The genomic sequence has a stop codon in frame compared with EST DDB0166819; the Q residue at position 776 is supported by many other Dictyostelids from several groups, e.g. D. purpureum, H.album, P. violaceum, and T. lacteum homologs; the correct protein sequence is shown here:
MKNINNKILKIFILFLAICSVKSDTCPTDSNWRPTPASSNSPVSPALPTTSLASDIVYGG NDLYYMAYWSMTDPNNLQPVSDVESEFSIALPAWAPDYFLIVAKQSAPALKANTNYQFSF DFKLGQVLTQGITYSNMTLSFYKPGDIDYLLWSYRAPMYSFTFTGDFSSTTYKSKTITFS VPVDLGLSTLILQVNRSRAMDYDDTTIFYKNMKITVPSKPVVAPPNLITKDSELINIPKA SVSLDPQDLSTCPYLASDLVHWHNPSTWSNNLVPQPNENITIPAGKRVLISPCSISQTAI YQRIVIPATSELIFADSNLTMNVKDILVQGKFIMGTTKCRYNANINIIFHGSKTKVDTIA PFYGSKGIAVSAGGFISVHGKQYHNSWTKLASTVWSGDRIIYVQDNINWEVGQQVLITTS QFKDEIDNQNEVLTIKSILGKAIEFTTPIKFYHYGGKEYQAEVALLSRRIIFQGNDESDQ DSFGGHVLVSGEGQFAGIQLKKMGQRNVKARYPLHFHLANVVQKSYISDCVVTKSYYRCY TIHGTNNLTLTRNVAFDVNGHCYYLEDGVEMDNTLSYNLAAFVHTIGEPAAGGAQTGETY YENENLTQPADSAAGGFYITNAYNTIIGNSASGGWAGFSFPNLEKPIGNHKNVEMEPQAF TTKVFEGNTAHSSGYQWISGSSIYVGGKLITDEVTGLLVYNTGRHSRPTCKDGIFSYDSS TYLWMRFNNTKVYLSNLGLGHWGDRVEVVGLEAYDSMRPASLFGAAWLSNAIVDGQTGNI LSKSQSYNRQGFQFYDTYVTTILSHITFRNFIQNPTSVYPDDDNVVIIALTFSDLYKPQF ISSTINITLENILPAQIIGHKIVPDSGSSRFFNFIDWDGSLVGTHVPTIVGSHEKWWSYD DSKCTYNNDWTIWVCQKGSKSVGNIEFWVPNLIIRGEQNEGDSFVGSVSLFGDGITDVRK TAITRNAGITGITSTGWMLWLDGGSPTYLQVWAAQVAYQQYIFLAIPYPPGTTFTISTEN KWAWQNAYGFNCTLASSAAEVRSSNGTKYYFDQTHLFVKIVNPVLTGSPAESFNRGGAKI DDVYWEYIYHINATNPNVSPNQDGFYTNLSYTLPSSTL
Pascale Gaudet January 2009
pfey July 2022 updated
Protein alignment with correct sequence on top and the missing Q - Glutamine residue in the curated model from genomic sequence at bottom.
correct: 721 TYLWMRFNNTKVYLSNLGLGHWGDRVEVVGLEAYDSMRPASLFGAAWLSNAIVDGQTGNI 780
TYLWMRFNNTKVYLSNLGLGHWGDRVEVVGLEAYDSMRPASLFGAAWLSNAIVDG TGNI
genomic: 721 TYLWMRFNNTKVYLSNLGLGHWGDRVEVVGLEAYDSMRPASLFGAAWLSNAIVDG-TGNI 779
Alignment of EST on top and genomic sequence at bottom; note the change from CAA to TAA which is a stop codon in frame in the middle alignement; an artificial gap has been introduced in the curated model to delete the stop codon, see protein alignment above.
EST: 183 tgttggattagaagcatatgattcaatgagaccagcatcattatttggtgcagcatggtt 242
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genome: 3636 tgttggattagaagcatatgattcaatgagaccagcatcattatttggtgcagcatggtt 3695
EST: 243 atcaaatgcaattgttgatggtcaaaccggcaatattcttagtaaatcacaatcatacaa 302
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genome: 3696 atcaaatgcaattgttgatggttaaaccggcaatattcttagtaaatcacaatcatacaa 3755
EST: 303 tagacaaggattccaattttatgatacctacgttacaactatcctctctcatattacatt 362
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genome: 3756 tagacaaggattccaattttatgatacctacgttacaactatcctctctcatattacatt 3815
pfey July 2022
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