DDB_G0286175 - dictyBase/community-annotations GitHub Wiki

Protein sequence derived at C-terminal region from RNAseq and AX4 reference sequence (Gareth Bloomfield, private communication) The Met residue has been restored by adding a 3 nt artificial gap; changed residues from the curated model-derived protein sequence are residue 12 (R) and residue 30 (H) and shown below.

MDLTPTYSPTLRPMLSQQYQTVPPFIIPPHDPNSPSPLSSPSLLSLHQIQMHHQQQLQLL
QQQQQQLQQQHQNQVVNQPIQPLQPQPSAFLLNHPNTITTPPLQPMMTPNTIISINSLPP
TTTTTTTTTTTTTIPNNNNNITLSPQHHHGQQQHHQHPHLRVDISNNNNSVVDQLPQQQQ
TNVNNNNNNNNNNNNNNNSNNNNNNNNDFSTPNSFSVPTTPMVAPQMQFPQPPPPLSALN
TPNNSTSNPTTPRNERDLLRRLAVANSNNNLNNNLNNLNNNNNNNNNNNNNNNNNNNNNS
NNNNINNNNNINNNNNLNNNNLNNNNLPIIQPLNLNNNNNNNNNNNNNNNNNLINPFLNE
AIDEQVVPKGSTSPLITSSKKRIKLNV

pfey April 2010

Nucleotide sequence alignment on top from AX4 reference sequence and at bottom genomic sequence without the initiating ATG that has been restored and 3 further nucleotide changes

Refseq: 4123368 atggatttaacaccaacttattcaccaacgttgagaccaatgttatctcaacaatatcag 4123309
                | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  
Genome: 1       agggatttaacaccaacttattcaccaacgttgaaaccaatgttatctcaacaatatcaa 60

Refseq: 4123308 actgtaccaccatttataataccacctcatgatccaaactcaccatctcctctatcatct 4123249
                ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Genome: 61      actgtaccaccatttataataccacctaatgatccaaactcaccatctcctctatcatct 120

Protein alignment with restored (via artificial gap) Met residue and two amino acid changes

RefSeq  1    MDLTPTYSPTLRPMLSQQYQTVPPFIIPPHDPNSPSPLSSPSLLSLHQIQMHHQQQLQLL  60
             MDLTPTYSPTL PMLSQQYQTVPPFIIPP DPNSPSPLSSPSLLSLHQIQMHHQQQLQLL
Genome  1    MDLTPTYSPTLKPMLSQQYQTVPPFIIPPNDPNSPSPLSSPSLLSLHQIQMHHQQQLQLL  60

pfey March 2022

return to DDB_G0286175 Gene Page