DDB_G0285953 - dictyBase/community-annotations GitHub Wiki

DDB_G0285953 protein sequence as derived from reference AX4 sequence (private communication G. Bloomfield); changes are shown below

MNVENNTRIEKIPKFTGDVDLILDLFENPPEQFNGEDQDENDNDEIQQSQSNLPPIPTPS
TSTYTSTTTITTTTTTPTPTTPITTNINDKESVSISNINVNDDSSSPNKRKLGEIGNSTP
SQPPSKKVSTPKSNESNKSVNYSGASPSNEGYSPSPSPSSKYIKTPISNSSSLSNTPLSN
SSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNNDNDKSKEISEDDK
FTLKKQQSFNVNFTQSLNDEVLSYTSSDYYRDNIDNPTETYTSSDNLNYENFDEELIFSA
PNNKDIIHIIDTDNKSSSSSSLSSLPSSSSQTNQPKNKSSSTTTKTTPSSTKTRTTSPTV
TKTNQISPNSINKFNSSNNNNNNNAITPSKKKRIDYDLISGTRVKTPKKSAIVSKQPKGF
LSTPKKNTTTVDDDGGDDDETATSKNNEDLNKNTNKDSDKNEKDFCPICQSEFVNPYYSP
CNHTCCFECWNQWLSLKLECPVCRERCRIKQCKPLTNLDSQQ

pfey May 2011

Alignment of reference AX4 sequence on top and genomic sequence at bottom; the first difference is the mutated code in genome for the first Met residue.

Query  2    TTTTGTAATAATGATAACATGAACGTTGAAAATAATAGCCGCATTGAAAAAATCCCCGAA  61
            |||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||                  ||
Sbjct  83   TTTTGTAATAATGATAACCTGAACCTTGAAAATAATACCCGCATTGAAAAAATCCCCAAA  142

Query  62   TTTACCGGAGATGTAGATTTAATTTTAGACTTATTTGAAAACCCACCAGAGCAATTTAAT  121
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  143  TTTACCGGAAATGTAAATTTAATTTTAGACTTATTTGAAAACCCACCAGAGCAATTTAAT  202

Alignment of protein from AX4 reference sequence on top and from genomic at bottom with a first L residue instead of an M and other differences

Correct  1    MNVENNTRIEKIPKFTGDVDLILDLFENPPEQFNGEDQDENDNDEIQQSQSNLPPIPTPS  60
               N ENNTRIEKIPKFTG V LILDLFENPPEQFNGEDQDENDNDEIQQSQSNLPPIPTPS
Genomic  1    LNLENNTRIEKIPKFTGNVNLILDLFENPPEQFNGEDQDENDNDEIQQSQSNLPPIPTPS  60

pfey March 2022

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