DDB_G0285807 - dictyBase/community-annotations GitHub Wiki

DDB_G0285807 protein sequence as derived from ESTs including the Threonine 125 shown below

MEYKIKLFLSFLIIRSIFGEEVRQLSFLNGNCDGIPYATYANTLCYPDTFAIVNESTIKL
RNSNGLQDCKVDTTNYNEQQQSGDIHNLYQCTVLSDSYENSISENYDTIIDKKTIINNDD
DSSSTSSSYEIPSFSYLFTYTKSRLPLMVNGYCNQIKLYNCENYQIYSFKNDSCFSNTDS
FSSYSYYKQMCRGDSILTFKCEECSSNSLETCILDNTEPSNLSECPNIKYTTIEKLLKEI
KNNNK

pfey October 2009

Alignment of EST with genomic DNA; several ESTs show the 1 nt deletion in the genomic sequence

EST:    241 attaataatgatgatgattcatcatcaacatcatcatcatatgaaattccatcattttca 300
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Genomic 446 attaataatgatgatgattcatcatca-catcatcatcatatgaaattccatcattttca 504

Alignment of protein sequence derived from ESTs on top with the T residue at position 125; protein from genomic with 2 nt deletion to stay in frame, at the bottom

Correct  121  DSSSTSSSYEIPSFSYLFTYTKSRLPLMVNGYCNQIKLYNCENYQIYSFKNDSCFSNTDS  180
              DSSS SSSYEIPSFSYLFTYTKSRLPLMVNGYCNQIKLYNCENYQIYSFKNDSCFSNTDS
Genomic  121  DSSS-SSSYEIPSFSYLFTYTKSRLPLMVNGYCNQIKLYNCENYQIYSFKNDSCFSNTDS  179

pfey March 2022

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