DDB_G0282637 - dictyBase/community-annotations GitHub Wiki

The DDB_G0282637 protein sequence as derived from EST ddc51i07 (DDB0101442) and unpublished sequence; changed residues are shown below

MEDCNNNNYEENENGAQFKLYNKDKEINNPQTKFDQNDLDYKLDYEFSLG
FLIVGIFSWFPLFFNFIYIRSQNSHARRMSAASIVIGSSYFIFFFLFWVV
LTVPKEYYYY

pfey December 2010

Protein alignment with corrected sequence on top and 6 changed residues due to incorrect genomic sequence

correct  1    MEDCNNNNYEENENGAQFKLYNKDKEINNPQTKFDQNDLDYKLDYEFSLGFLIVGIFSWF  60
              MEDCNNNNYEENENGAQFKLYNKDKEINNPQTKFDQNDLDYKLDYEFSLGFLIVGIFSWF
genomic  1    MEDCNNNNYEENENGAQFKLYNKDKEINNPQTKFDQNDLDYKLDYEFSLGFLIVGIFSWF  60

correct  61   PLFFNFIYIRSQNSHARRMSAASIVIGSSYFIFFFLFWVVLTVPKEYYYY  110
                FF FI I SQNSHARRMSA SIVIGSSYFIFFFLFWVVLTVPKEYYYY
genomic  61   SFFFYFIHI-SQNSHARRMSATSIVIGSSYFIFFFLFWVVLTVPKEYYYY  109

Nucleotide alignment with correct EST DDB0101442 sequence on top; the genomic sequence at bottom has an artificial gap to avoid a premature stop codon that is not in frame in the correct sequence.

EST:  162 tataaacttgattatgaattttcgttaggttttttaattgttggcatattttcatggttt 221
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
cDNA: 121 tataaacttgattatgaattttcgttaggttttttaattgttggcatattttcatggttt 180

EST:  222 ccattattttttaattttatatacattagatctcaaaattctcatgcaagaagaatgtct 281
           |||| |||||| |||||||| | ||    |||||||||||||||||||||||||||||| 
cDNA: 181 tcattttttttttattttatacatatc---tctcaaaattctcatgcaagaagaatgtct 237

EST:  282 gctgcatcaatagttattggaagttcttattttatttttttctttctattttgggttgtg 341
          ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
cDNA: 238 gctacatcaatagttattggaagttcttattttatttttttctttctattttgggttgtg 297

pfey March 2022

return to DDB_G0282637 Gene Page