DDB_G0276001 - dictyBase/community-annotations GitHub Wiki

The DDB_G0276001 protein sequence as derived from unpublished AX4 reference (Gareth Bloomfield) with the new initiator Met and the changed Leu residue in positions 1 and 2.

MLFKSIISLSNKSLNVISKSLVSNDSNLNSINFSCNSVSNLTSTTFFTRPNFVNY

rdodson June 2011

Protein alignement of correct sequence on top and curated model based on genomic at bottom

Correct  1   MLFKSIISLSNKSLNVISKSLVSNDSNLNSINFSCNSVSNLTSTTFFTRPNFVNY  56
              +FKSIISLSNKSLNVISKSLVSNDSNLNSINFSCNSVSNLTSTTFFTRPNFVNY
Genomic  1   RVFKSIISLSNKSLNVISKSLVSNDSNLNSINFSCNSVSNLTSTTFFTRPNFVNY  56

Nucleotide alignment with genomic sequence on top (AGGGTA) and AX4 reference sequence (ATGTTA) at bottom; the reference sequence codes for the correct 2 first protein residues including the Met initiation codon.

genomic  1    CAAATATTAGTATAATATTAAATTAAAAACTAAAAAAAAAAGGGTATTCAGTAAGTATCC  60
              ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
ref-seq  438  CAAATATTAGTATAATATTAAATTAAAAACTAAAAAAAAAATGTTATTCAGTAAGTATCC  379

pfey July 2022

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