Credits - daducci/AMICO GitHub Wiki

This page is dedicated to thanking people who has been involved in this project as well as to collect all the papers that should be cited when using the AMICO tool to fit different microstructural models.

Project leader

Alessandro Daducci with all the Diffusion Imaging and Connectivity Estimation (DICE) lab at the University of Verona

Major code developers, testers and maintainers

  • Mario Alberto Ocampo-Pineda (University of Verona)
  • Matteo Battocchio (University of Verona)
  • Erick Hernandez Gutierrez (University of Guanajuato)
  • Marco Palombo (UCL)
  • David Romascano (EPFL)
  • Erick Canales-Rodriguez (EPFL)
  • Francois Rheault (Université de Sherbrooke)
  • Maxime Descoteaux (Université de Sherbrooke)
  • Simona Schiavi (University of Verona)
  • Clorindo Notte (University of Verona)
  • Ilaria Gabusi (University of Verona)

Other contributors

  • Brainhack team who helped in adapting AMICO to fit the SANDI model
  • UCL Microstructure Imaging Group who helped in developing the project at its early stages

References

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data Alessandro Daducci, Erick Canales-Rodriguez, Hui Zhang, Tim Dyrby, Daniel C Alexander, Jean-Philippe Thiran Neuroimage 105 (2015): 32-44 DOI

Orientationally invariant indices of axon diameter and density from diffusion MRI Daniel C Alexander, Penny L Hubbard, Matt G Hall, Elizabeth A Moore, Maurice Ptito, Geoff J M Parker, Tim B Dyrby Neuroimage 52.4 (2010): 1374-1389 DOI

NODDI: practical in vivo neurite orientation dispersion and density imaging of the human brain Hui Zhang, Torben Schneider, Claudia A Wheeler-Kingshott, Daniel C Alexander Neuroimage 61.4 (2012): 1000-1016 DOI

SANDI: A compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI Marco Palombo, Andrada Ianus, Michele Guerreri, Daniel Nunes, Daniel C. Alexander, Noam Shemesh, Hui Zhang Neuroimage 215 (2020): 116835 DOI