nf-resequencing-mem wiki

Welcome to the nf-resequencing-mem wiki!

This wiki is a collection of guides and tutorials for the Nextflow pipeline for resequencing analysis nf-resequencing-mem.

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Contents

1. Home
2. Running nf-resequencing-mem
   • Creating a snpEff database
   • Normalizing VCF files
   • Running normalization only
3. Merging different datasets of SNPs
   • Representing non-variant sequences
   • Calling gVCF files with nf-resequencing-mem
   • Merging gVCF files
   • Transforming a gVCF into a VCF file