adegenet - christianparobek/cambodiaWGS GitHub Wiki
Want to use the R package adegenet.
Basics Tutorial
Genomics Tutorial
Data Import Tutorial
From the genomics tutorial, the adegenet class genlight, which stores genome-wide SNP data for multiple individuals, can only handle biallelic SNP markers.
I installed adegenet on my computer, so might as well run it locally and benefit from the nicer interface of RStudio.