Tutorials - cellmodeller/CellModeller GitHub Wiki

In this section are tutorial that are designed to teach users about the basic functionality of CellModeller. At the end of these tutorials, hopefully you will be able to write your own models to simulate your bacterial dynamics of interest.

Please note that we are still in the process of making these, please bear with us.

There are 3 core tutorials, each designed to demonstrate the core modules in CellModeller:

  1. Biophysics (The CLBacterium module)

  2. Intracellular chemical dynamics (The CLEulerIntegrator module)

  3. Intercellular signalling and diffusion (the CLCrankNicIntegrator and GridDiffusion modules)

Here is a tutorial on how to study intercellular contacts (a new feature in release 4.2.1):

  1. Intercellular contact analysis and graphs

We have also made a further tutorial to demonstrate how to analyze the data generated by CellModeller:

  1. Analyzing Data (Dealing with outputs and scripts)

Before starting these tutorials, make sure that CellModeller is properly installed and working (Installation). Also, please familiarize yourself with how to start a GUI and load models (User Guide).

If you want more, there are some further old examples here: Old Examples