Files

ViNERS generates intermediate and final output data-files, which are organised in a SPARC dataset structure. ViNERS uses tools.file to manage subject-, sample-, and run-specific file-paths transparently.

Data file types

All model outputs are saved as MATLAB v7 .mat datafiles. The internals of these files will vary depending on the particular model stage in question:

• models.axon_population: sub~/axons/axons (name).mat
• models.nerve_anatomy: sub~/eidors/sensitivity (name).mat and sub~/eidors/stimulus (name).mat
• models.membrane_currents: sub~/axons/[name]/[type]/index.mat
• models.axon_sfap: sub~/sfap/sensitivity (name).mat
• models.axon_thresholds: sub~/thresholds/[name]/type-fascicle0.mat
• models.nerve_stimulation: sub~/stim/[name]/type-fascicle0.mat
• models.nerve_recording: sub~/waves/[activity (name)]/epoch_(...).mat
• models.ECAP_recording: sub~/waves/stimulus (name)/stim_(...).mat

See +models for more about the individual model steps.

Organisation

Shows an example data organisation and the code which generates each data file or folder