References - bvshvarf/bvshvarf.github.io GitHub Wiki

Author(s): Bashar Fakhreddin

  1. Sequencing Market Size & Outlook, 2030. (2024). Grandviewresearch.com. Link

  2. FASTQ files explained - Illumina Knowledge. (2023). Illumina.com. Link

  3. He, B., et al. (2020). Assessing the Impact of Data Preprocessing on Analyzing Next Generation Sequencing Data. Frontiers in Bioengineering and Biotechnology, 8. https://doi.org/10.3389/fbioe.2020.00817

  4. Enthought. (2023, September 25). What is a Bioinformatics Pipeline? LinkedIn.com. Link

  5. Akalin, A. (2020, September 30). 5.4 Data preprocessing | Computational Genomics with R. Link

  6. Errors in Software. (2014). Panko.com. Link

  7. High-Throughput Sequencing: Definition, Technology, Advantages, Application and Workflow. (2021). CD-Genomics.com. Link

  8. Khan, F. (2024, April 30). What Is Data Preprocessing: Definition, Importance, and Steps. Astera. Link

  9. Thales. (2024). Software Intellectual Property: What It Is & How to Protect It. Cpl.thalesgroup.com. Link

  10. Karn, J. (2018, May 29). GDPR and HIPAA Compliance – Do They Overlap? Total HIPAA Compliance. Link

  11. Center for Devices and Radiological Health. (2022, September 12). Computer Software Assurance for Production and Quality System Software. FDA.gov. Link

  12. Biological Sequence - an overview. (n.d.). ScienceDirect. Link

  13. Galaxy. (2019). Usegalaxy.org. Link

  14. Kukurba, K. R., & Montgomery, S. B. (2015). RNA Sequencing and Analysis. Cold Spring Harbor Protocols, 2015(11), pdb.top084970. https://doi.org/10.1101/pdb.top084970

  15. Mansisidor, A. R., & Risca, V. I. (2022). Chromatin accessibility: methods, mechanisms, and biological insights. Nucleus, 13(1), 236–276. https://doi.org/10.1080/19491034.2022.2143106

  16. BS-Seq/Bisulfite-seq/WGBS. (n.d.). Illumina.com. Link

  17. Yin, Y., et al. (2017). Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science, 356(6337), eaaj2239. https://doi.org/10.1126/science.aaj2239

  18. Bates, S. (2024). Deoxyribonucleic Acid (DNA). Genome.gov. Link

  19. Wang, D., & Farhana, A. (2020). Biochemistry, RNA Structure. StatPearls Publishing. Link

  20. Brody, L. (2019). Gene Expression. Genome.gov. Link

  21. Shahryary, Y., Hazarika, R. R., & Johannes, F. (2020). MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data. BMC Genomics, 21(1), 479. https://doi.org/10.1186/s12864-020-06886-3