Configuration File Setup - bvshvarf/bvshvarf.github.io GitHub Wiki
Author(s): Thomas Carey
Choosing a method to upload parameters
The user can choose to create a new set of parameters using our GUI with the Create Config button,
or upload parameters in a yaml configuration file with the Select Config button.
First Set of Parameters
For any one of the three datatypes, the first parameter that must be provided is either paired, or paired per samp.
Second Set of Parameters
Parameters:
- minQual: The minimum quality to keep bases from the side of a read (20 by default)
- Standard Adapter (can be 'illumina', 'nextera', or 'small_rna') See the Trimgalore User Manual for more information
Once the Parameters have been selected, click the Use Config button and continue on to submit for preprocessing
(You can also save the set of parameters you have chosen using the Download Config File button in the bottom right of the menu)