Searching Data in NCBI - bicbioeng/DeepSeqDock GitHub Wiki

Website: NCBI Gene Expression Omnibus (GEO) DataSets

  • Access the NCBI GEO DataSets portal.
  • Perform a keyword search:
    • Use terms like ALS, Alzheimer, Monkeypox, or brain tumor.
    • Filter for species: Homo Sapiens (human).
  • Identify datasets with RNA count matrices:
  • Look for datasets that include RNA-seq count matrices or raw RNA-seq data.
  • Select relevant datasets for download.

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