Plagiarism and academic integrity: Citation Models - bcb420-2025/Clare_Gillis GitHub Wiki

Estimated time to complete: 20 mins

Work-hours: 20 mins

Citation examples for:

  • a procedure in the methods section of a journal article, as you would cite it in a technical report;

I used the protein representation developed by Luo et al. for their model DiffAb [1]

  1. Luo, S., Su, Y., Peng, X., Wang, S., Peng, J., Ma, J. (2022) Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures. bioRxiv. https://doi.org/10.1101/2022.07.10.499510
  • a piece of code you found in a StackOverflow article, as you would put it as a comment into computer code;
# The code below was based off a StackOverflow post made by Spacedman
# https://stackoverflow.com/a/32251149

d <- DNAString(paste0(sample(c("A","C","T","G"),600,TRUE),collapse=""))
d_string <- as.character(d)
  • some contents from a classmate’s journal that you incoporate into your own journal:

The formatting for this journal entry was inspired by my friend Izumi's entry (linked below)

Izumi Ando's Entry 3: Plagiarism Module in Bioinfo Prep (https://github.com/bcb420-2025/Izumi_Ando/wiki/Entry-3%3A-Plagiarism-Module-in-Bioinfo-Prep)