Welcome to Chloe Calica's BCB420 Journal!

About Me

• Name: Chloe Nichole Calica
• Email: [email protected]
• Program: Bioinformatics Specialist, Biochemistry Major, Computer Science Minor
• BCB430 Project: Working on a consensus algorithm to merge multiple embeddings from various dimensionality reduction techniques
• Fun Fact: I have adopted two cats named Anchovy and Tuna.

Journal Entries

Entries are labelled in the following format: Week # . Entry # within that week so Entry 1.1 below indicates that the journal entry was created for week 1 and it is the first entry for that week. Additionally, headers for the week numbers were added to better group the journal entries so its easier to navigate thru them.

Week 1

• Entry 1.1: Account and Docker Setup
• Entry 1.2: Docker Homework

Week 2

• Entry 2.1: Basic Course Prep
• Entry 2.2: R-Basics
• Entry 2.3: Bioinformatics Basics
• Entry 2.4: Mock Quiz Concept Review

Week 3

• Entry 3.1: RMarkdown Basics
• Entry 3.2: Dataset Selection

Week 4/5/6

• Combine all the entries so that only one is used for A1
• Entry 4-5-6.1: Assignment 1

Week 7

• Reading Week

Week 8/9

• Entry 8.1: CCDS (Annotation Resource)
• Entry 9.1: Assignment 2
• Entry 9.2: G:Profiler Assignment

Week 10

• Entry 10.1: GSEA Assignment

Week 11/12

• Entry 11-12.1: Assignment 3

Assignments

• A1: Dataset Selection and Initial Processing
• A2: Differential Expression and ORA
• A3: Dataset Pathway and Network Analysis