Assignment 1: Normalize the data set - bcb420-2024/Krutika_Joshi GitHub Wiki

  1. I used TMM because I felt like this method would perfectly fit the data differentially expressed(DE) data I am examining. It is also simple to apply and I had learned this as the natural step in the pipeline for MGY441.
  2. I followed the code in lecture slides with minor tweaks to encompass my focused data set.
  3. I then created a box plot to view the difference in the gene counts before and after normalization