Keynotes

I have had problems with Rstudio due to my M1 Macbook, further clarifications on solutions will be provided The Docker was set up on Windows 10 Home. No problems occured so far. M1 laptop will be used for noting R projects.

Problems Occured

1. Hyper-V was not on Windows 10 home. Docker was not able to initiate.
2. The directory while setting docker up was set as "${PWD}" at Windwos than $(pwd) at Mac.
3. RAM allocation on windows caused extesnive usage of processor and computer slowness.
4. G Profile visualization not appearing on the notebook file.
5. GSEA does not work well on the MacOS.
6. Multiple running attempts on R notebook gives 404 error while retrieving data from a foreign server such as bioMart.
7. GSEA analysis data retrieved from Bader's lab dataset. The lecture query causes problem in data retrieval.
8. GSEA application to Cytoscape transition did not result in visualization
9. RAM problems blocked me from analysin my thresholded analysis (reported to the TA Andrew Duncan)

Problems Solutions

1. The Hyper-v was installed by a package from Microsoft Package Manager. Then Hypver-v was enable through apps section on the control panel.Virtualization was enabled on the BIOS settings.
2. Problems solved on directory specification of docker.
3. I have optimized the program based on my needs of RAM on windows.
4. The visualization appears on a higher RAM having device (PC).
5. I have switched to PC to work better on my GSEA enrichment analysis.
6. I have restarted both Rstudio and the computer to refresh the cache.
7. Solved by editing the query's section of current release to March-01-2021.
8. I restarted the Cytoscape and refreshed the cache to allow GSEA enriched analysis to transition to the Cytoscape visualizations
9. I started using PC, my MAC did not work on the g:Profiler analysis section of Assignment 2 !!!