Assignment 1 - bcb420-2023/Maryam_Hasanzadehkiabi GitHub Wiki

The version I submitted after deadline of Feb 21 after having worked more on it:

A1 HTML (final): https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/Assignment%201/Assignment_1_final.html

A1 .RMD (final) : https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/Assignment%201/Assignment_1_final.Rmd

The version I submitted Feb 21:

A1 HTML: https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/A1.html

A1 .RMD (final) : https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/A1.Rmd

My draft version:

A1 RMD (draft 2- still not complete) : https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/Assignment_1.Rmd

Estimated time: 10 hrs

Actual time: 30 hrs

Procedure:

[Dataset] (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166474)

my dataset has bimodal density distribution, it is also a single cell analysis over 2 categories (cases vs. controls)

I didn't know what R package to use for normalization since its a single cell

I was confused on whether we do cleaning and mapping before or after normalization, but its before. so mapping is done on original data not the normalized data version

References

Isserlin, R. (2020). BCB420 - Computational System Biology. Github.Io. https://bcb420-2023.github.io/General_course_prep/

Steipe, B. (2022). R Basics. Github.Io. https://bcb420-2023.github.io/R_basics/ This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License.