Assignment 1 - bcb420-2023/Maryam_Hasanzadehkiabi GitHub Wiki
The version I submitted after deadline of Feb 21 after having worked more on it:
A1 HTML (final): https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/Assignment%201/Assignment_1_final.html
A1 .RMD (final) : https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/Assignment%201/Assignment_1_final.Rmd
The version I submitted Feb 21:
A1 HTML: https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/A1.html
A1 .RMD (final) : https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/A1.Rmd
My draft version:
A1 RMD (draft 2- still not complete) : https://github.com/bcb420-2023/Maryam_Hasanzadehkiabi/blob/main/Assignment_1.Rmd
Estimated time: 10 hrs
Actual time: 30 hrs
Procedure:
[Dataset] (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166474)
my dataset has bimodal density distribution, it is also a single cell analysis over 2 categories (cases vs. controls)
I didn't know what R package to use for normalization since its a single cell
I was confused on whether we do cleaning and mapping before or after normalization, but its before. so mapping is done on original data not the normalized data version
References
Isserlin, R. (2020). BCB420 - Computational System Biology. Github.Io. https://bcb420-2023.github.io/General_course_prep/
Steipe, B. (2022). R Basics. Github.Io. https://bcb420-2023.github.io/R_basics/ This copyrighted material is licensed under a Creative Commons Attribution 4.0 International License.