Home - apicco/trajectory_alignment GitHub Wiki

Welcome to the trajalign documentation wiki and home page.

To start with trajalign, read first how to install it.

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If you use this software, please cite:

Picco, A., Kaksonen, M., Precise tracking of the dynamics of multiple proteins in endocytic events, Methods in Cell Biology, Vol. 139, pages 51-68 (2017)

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Content:

• Installation

• The trajectory class

• Average trajectories together

• Align average trajectories together

Examples:

• All the examples

• An example of the use of the trajectory class

• An example of the averaging of trajectories

• An example of the alignment of average trajectories

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External links:

Colaboratory page with the examples above

Github software repository

SpotQuant A software for the quantification of the number of molecules from fluorescence intensity ratiometric measurements between diffraction limited spots, imaged by fluorescence microscopy.

Python

Kaksonen laboratory

References:

Picco, Kukulski, et al., MBoC 2018

Picco and Kaksonen, Methods in Cell Biology 2017

Kukulski, Picco, et al., eLife 2016

Picco, et al., eLife 2015