Output Writers - apache/ctakes GitHub Wiki

Output Writers

Name Description
CUI Count Writer Writes a two-column BSV file containing CUIs and their total counts in a document.
CUI List Writer Writes a list of CUIs, covered text and preferred text to files.
Database File Writer Writes to a file that is compatible with Database import.
Dependency Node Writer Writes information about Dependency Nodes to file.
Document Text Writer Writes Text files with original text from the document.
Document Text Writer (Dir) Writes Text files with original text from the document in a specified directory.
Event Time Anafora Writer Writes Temporal Events and Times in Anafora format.
FHIR JSON File Writer (Dir Tree) Writes Json files with full representation of input text and all extracted information.
FHIR JSON Writer Writes Json to standard output with full representation of input text and all extracted information.
HTML Table Writer Writes HTML files with a Table representation of extracted information.
HTML Writer Writes html files with document text and simple markups (Semantic Group, CUI, Negation).
HTML Writer Writes html files with document text and simple markups (Semantic Group, CUI, Negation).
I2b2JdbcWriter Writes UMLS Concepts to a standard I2B2 Observation_Fact table.
JDBC Writer (Template) Stores extracted information and document metadata in a database.
Judged Attribute XMI Writer Writes XMI File based upon judged attributes.
Medication Table Writer Writes a table of Medication information to file, sorted by character index.
ODIE Vector File Writer Write ODIE Vector File.
Parser Tree Writer Writes information about TreeBank Nodes to file.
Pretty Text Writer Writes text files with document text and simple markups (POS, Semantic Group, CUI, Negation).
Pretty Text Writer (UIMA) Writes text files with document text and simple markups (POS, Semantic Group, CUI, Negation).
Property Text Writer Writes text files with lists of annotations and properties (POS, Semantic Group, CUI, Negation).
Property Text Writer (UIMA) Writes text files with lists of annotations and properties (POS, Semantic Group, CUI, Negation).
Semantic Table Writer Writes a table of Annotation information to file, grouped by Semantic Type.
Sentences Writer Writes Text files with original text from the document, sentence by sentence.
SimpleMedDatesPrinter Finds start and stop dates for medication events.
Text Span Writer Writes BSV files with original text for extracted annotations and their span offsets.
Token Offset Writer Writes a two-column BSV file containing Begin and End offsets of tokens in a document.
Token Table Writer Writes a table of base tokens and their spans in a directory tree.
Word Count Writer Writes a two-column BSV file containing Words and their total counts in a document.
XMI Writer Writes XMI files with full representation of input text and all extracted information.
XMI Writer (Dir Tree) Writes XMI files with full representation of input text and all extracted information.
XMI Writer 2 Writes XMI files with full representation of input text and all extracted information.
XMI Writer 3 Writes XMI files with full representation of input text and all extracted information.
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