Shanoir Installation Deploy - alexpron/shanoir-ng GitHub Wiki

Initial deployement

0. ensure all containers are stopped and all volumes are destroyed

[!WARNING] this destroys all external volumes defined in the docker-compose .yml file used

docker compose -f docker-compose-dev.yml down -v

1. deploy the database containers and wait until they are ready to accept incoming connections

   docker compose -f docker-compose-dev.yml up -d database keycloak-database 
   

2. initialise the keycloak container, then start it

   docker compose -f docker-compose-dev.yml run --rm -e SHANOIR_MIGRATION=init keycloak 
   docker compose -f docker-compose-dev.yml up -d keycloak 
   

3. initialise each microservice

   for ms in users studies datasets import preclinical ; do
       docker compose -f docker-compose-dev.yml run --rm -e SHANOIR_MIGRATION=init "$ms" 
   done
   

4. start the remaining containers

   docker compose -f docker-compose-dev.yml up -d