Continue discussion on single-cell representation (#409). Comments
since the last call start here.
JSON vs. YAML: We are using both formats for similar tasks. Can we
formalize our expectations whether one or both MUST/SHOULD/MAY (NOT)
be provided or accepted by tools?
A growing number of tools is "AIRR compliant". Is this only support
for Rearrangement or also for Repertoire?
Current status of the discussion on Germline/Genotype
representation in the Schema (#530).
Terms for WG products: Now created a Terminology GDoc to collect
ideas and feedback on terms that should be subject to usage guide-
lines for AIRR-C-approved documents. Please comment until the next
call. Also please have a look at the following other resource for
Glossaries and terms:
We will attempt to reduce the runtime of Travis CI test first, then
test GitHub Actions if that is insufficient. Will follow-up with
Artur regarding alternative compute resources next time. On a related
note, also Docker Hub stopped to perform autobuilds of containers for
free accounts (the pricing is more modest, though). This will likely
not affect the WG directly, but potentially some of its
members/associated projects.
We can use sample_processessing_id for the library identifier.
We are good to proceed to experimental schema definition with
these rules.
Discussion of CellPropertyVector.
Discussion of whether YAML or JSON should be the default for
Repertoire and other non-TSV schema. To be continued...
Did not discuss the last two points on the agenda, pushed to next
call.
September meeting we be moved off-cycle, 1 week later, to accommodate
the US labor day holiday. This will not affect the following
calls, so the next-but-one will be on Mon, 2021-10-04 as scheduled.