L I O R - aidenlab/juicer GitHub Wiki
To create Inner, Outer, and Tandem Hi-C maps, the following flag can be used with pre:
-a <integer>
1 inner
2 outer
3 tandem-left
4 tandem-right
5 tandem-left or tandem-right
To create Inner, Outer, and Tandem Hi-C maps, the following flag can be used with pre:
-a <integer>
1 inner
2 outer
3 tandem-left
4 tandem-right
5 tandem-left or tandem-right