Genome assembly assessment: Checkpoint

• how would you assess the quality of your genome? name at least 3 methods. which one would you chose "quick and dirty" and which one for more complex analysis?
• why do we need to check for contaminations?
• how would genome polishing affect the genome if we don't separate the haplotypes?
• why do long reads in general give a more continuous genome assembly? name a metric to assess continuity.

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