CLI Flags - acil-bwh/ChestImagingPlatform GitHub Wiki

Flag	Description	small flag
[i,o]ct	Input/output CT (single) file	remove?
[i,o]lm	Input/output label map file	remove?
cip[r,t,p]	CIP chest [region,type,pair]
[f,m][ct,lm]	fixed/moving CT/label map file	remove?
[i,o]tx	Input/output transform	t
[i,o]xml	Input/output xml file	x
[i,o]p	Input/output particles
[i,o][v,a,f]p	Input/output vessel/airway/fissure particles
[i,o][l,r]sm	Input/output left/right lobe shape model
[i,o]rtp	Input/output chest-region chest-type points file
dim	dimensions

When there is no ambiguity possible, i and o can be used generically to designate input/output.