Visualization - abyzovlab/CNVnator GitHub Wiki
To visualize specific region one have to do the following
./cnvnator -root file.root [-chrom chr_name1 ...] -view bin_size [-ngc]
Once prompted enter a genomic region, e.g.
>chr12:11396601-11436500
or
>chr12 11396601 11436500
Additionally one can specify length of flanking regions (default is 10 kb) to be also displayed, e.g.
>chr12:11396601-11436500 100000
or
>chr12 11396601 11436500 100000
One can also perform instant genotyping by adding word 'genotype', e.g.
>chr12:11396601-11436500 genotype
or
>chr12 11396601 11436500 genotype