TODO list - abulovic/SuperExonRetriver2000 GitHub Wiki

  1. Mark the frames for each of the alignment exons. Alignment exon is to be the part of the alignment with the referent exon for which there are no gaps in the referent exon.
  2. Translate the exons to a protein product. (Using the information on their frames)
  3. Give information on assembly (link and assembly ID)
  4. Offer explanation on the method for each protein (putative orthology from which human protein)
  5. Assign frame information to Ensembl exons. (currently working on it)