VIBRANT - aaruni96/maps GitHub Wiki

VIBRANT is a virus identification tool in python.

The runtime is called github.anantharaman.vibrant/x86_64/1.2.1 and can be installed with

maps -d github.anantharaman.vibrant/x86_64/1.2.1

Then execute using

maps -r github.anantharaman.vibrant/x86_64/1.2.1

The runtime includes all the prerequisite packages, and the database already installed and ready to go.

Vibrant is installed in /root/VIBRANT. Test by changing to the Vibrant directory, and running on the example data.

cd /root/VIBRANT
python3 VIBRANT_run.py example_data/mixed_example.fasta

~/Public from outside the runtime is directly shared to /home/runtime/Public inside the runtime, and can be used to import input into the runtime.