ScSmOP Module Configuration - ZhengmzLab/ScSmOP GitHub Wiki

Module configuration implemented by ScSmOP for different techniques. The row name shows the type of single-cell single-molecule methods, and the column name presents key modules of ScSmOP. *indicates the implemented modules.

		Barcode-chain Hash Table	Probability Hash Table	BWA	STAR	Remove	Merge	Remove
						Duplication	Fragment	DupUMI
ChIA-Drop			*	*			*
SPRITE		*		*		*
RD-SPRITE	DNA	*		*		*
RD-SPRITE	RNA				*	*
scSPRITE		*			*	*
scRNA-seq			*		*			*
Drop-seq			*		*			*
scATAC-seq			*	*
scARS-seq	RNA		*		*			*
scARS-seq	ATAC			*		*
Spatial Transcriptomics			*		*			*