Full list of the public datasets - YJDIFF/Biomedical_datasets GitHub Wiki
Welcome to the Biomedical_datasets wiki! The Table belongs to the research paper "". If you find the table or the paper help your research, please consider to cite:
Appendix C A non-exhaustive list of the public datasets. AP: Anthropometric; US: Ultrasound; MCS: Microscopy
| Category | Name | Public year | Link | Availability | Register | Number | Parts |
|---|---|---|---|---|---|---|---|
| AP | SCAPE | 2005 | https://ai.stanford.edu/~drago/Projects/scape/scape.html | public available | Register requested | 71 | 3D Anthropometric |
| AP | MIT | 2008 | http://people.csail.mit.edu/drdaniel/mesh_animation/#data | public available | Register not requested | 8 | 3D Anthropometric |
| AP | CAESAR | 1999 | http://store.sae.org/caesar/#3dna | Commercial | 4400 | 3D Anthropometric | |
| CBCT | Dental CBCT data2-4 | 2016 | https://figshare.com/articles/Data3/3404680 | public available | Register not requested | 3 | Dental |
| https://figshare.com/articles/New_draft_item/3404647 | |||||||
| https://figshare.com/articles/Data4/3404683 | |||||||
| CT | SYNAPSE | 2015 | https://www.synapse.org/# | public available | Register requested | 155 | Organs |
| CT | TCIA pancreas-CT | 2016 | https://wiki.cancerimagingarchive.net/display/Public/Pancreas-CT | public available | Register not requested | 82 | Pancreas |
| CT | LiTs | 2017 | https://competitions.codalab.org/competitions/17094 | public available | Register requested | 201 | Liver and liver tumor |
| CT | 3DIRCADb-01 | unknown | https://www.ircad.fr/research/3d-ircadb-01/ | public available | Register not requested | 20 | Liver and liver tumor |
| CT | 3DIRCADb-02 | unknown | https://www.ircad.fr/research/3d-ircadb-02/ | public available | Register not requested | 2 | Human Body |
| CT | KITS19 | 2019 | https://kits19.grand-challenge.org/home/ | public available | Register requested | 300 | Kidney and tumor |
| CT | Computational Anatomy | unknown | http://www.comp-anatomy.org/wiki/ | Server not accessable | unknown | 640 | Varying |
| CT | MICCAI SLiver07 | 2007 | https://sliver07.grand-challenge.org/Home/ | public available | Register requested | 30 | Liver |
| CT | EXACT09 challenge | 2009 | http://image.diku.dk/exact/index.php? | public available | Register requested | 75 | chest |
| CT | 4D-Lung | 2019 | https://wiki.cancerimagingarchive.net/display/Public/4D-Lung | public available | Register not requested | 20 | Lung |
| MCS | Xenopus Laevis stage series: complete | 1994 | https://www.xenbase.org/anatomy/alldev.do | public available | Register not requested | 112+ | Xenbase |
| MCS | ISBI 2013 (SNEMI3D) | 2013 | http://brainiac2.mit.edu/SNEMI3D/ | public available | Register requested | 2 | Mouse Cortex |
| MCS | ISBI 2012 segmentation of Neuronal structures | 2012 | http://brainiac2.mit.edu/isbi_challenge/ | public available | Register requested | 2 | |
| MCS | 3D confocal stacks of Arabidopsis thaliana | 2015 | https://bitbucket.org/jstegmaier/embryomicsbenchmark/downloads/ | public available | Register not requested | 1 | Arabidopsis thaliana |
| MCS | Alzheimer disease mouse models | 2018 | https://doi.org/10.7298/X4FJ2F1D | public available | Register not requested | unknown | Vessel, Vascular, Alzheimer’s disease |
| MCS | Cell Tracking Benchmark and the Cell Segmentation Benchmark | 2012 | http://celltrackingchallenge.net/ | public available | Register not requested | 16+ | sub-datasets |
| MRI | ISLES-2015 | 2015 | http://www.isles-challenge.org/ISLES2015/ | public available | Register requested | 64 | Brain |
| MRI | PROMISE12 | 2012 | https://promise12.grand-challenge.org/Home/ | public available | Register requested | 80 | Prostate |
| MRI | HVSMR 2016 | 2016 | http://segchd.csail.mit.edu/ | public available | Register not requested | 20 | Cardiovascular |
| MRI | CANDI | 2008 | https://www.nitrc.org/projects/candi_share/ | public available | Submit data request | 103 | Brain |
| MRI | IBSR18 | 1997 | https://www.nitrc.org/projects/ibsr | public available | unknown | 18 | Brain |
| MRI | IBSR20 | 1997 | https://www.nitrc.org/projects/ibsr | public available | Register requested | 20 | Brain |
| MRI | MICCAI 2008 MS lesion segmentation challenge | 2008 | https://www.nitrc.org/projects/msseg/ | public available | Register requested | 43 | Brain |
| MRI | ISBI 2015 longitudinal MS lesion segmentation challenge | 2015 | http://iacl.ece.jhu.edu/index.php/MSChallenge | public available | Register requested | 21 | Brain |
| MRI | BraTS-2018 | 2018 | https://www.med.upenn.edu/sbia/brats2018.html | public available | Register requested | 461 | Brain |
| MRI | BraTS-2015 | 2015 | https://www.smir.ch/BRATS/Start2015 | No longer available | Register requested | 274 | Brain |
| MRI | PROSTATEx-2 | 2017 | http://spiechallenges.cloudapp.net/competitions/7#learn_the_details | public available | Register requested | 162 | Prostate |
| MRI | 2018 Atrial Segmentation Challenge | 2018 | http://atriaseg2018.cardiacatlas.org/ | No longer available | Register requested | 154 | cardiac |
| MRI | SKI10 | 2010 | http://www.ski10.org/ | No longer available | unknown | 150 | Knee |
| MRI | MRBrainS13 | 2013 | https://mrbrains13.isi.uu.nl/ | No longer available | unknown | Brain | |
| MRI | MRBrainS18 | 2018 | https://mrbrains18.isi.uu.nl/ | public available | Register requested | 30 | |
| MRI | CDEMRIS fibrosis scar challenge dataset | 2016 | https://figshare.com/articles/CDEMRIS_fibrosis_scar_challenge_data_2012/4214532 | public available | Register not requested | 60 | cardiovascular |
| MRI | ACDC challenge | 2017 | https://www.creatis.insa-lyon.fr/Challenge/acdc/index.html | public available | Register requested | 150 | cardiac |
| MRI | UK Digital Heart Project | 2010 | http://digital-heart.org | public available | Register not requested | unknown | Heart |
| MRI | iSeg 2017 Challenge | 2017 | http://iseg2017.web.unc.edu/ | public available | Register requested | unknown | Brain |
| MRI | IVDM3Seg | 2018 | https://ivdm3seg.weebly.com/ | public available | Register requested | 96 | Intervertebral Disc |
| MRI/CT | Medical Segmentation Decathlon | 2019 | http://medicaldecathlon.com/ | public available | Register not requested | 2,633 | Multi-organs |
| MRI/CT | ISLES-2018 | 2018 | http://www.isles-challenge.org/ | public available | Register requested | 95 | Brain |
| MRI/CT | VISCERAL-Anatomy3 | 2015 | http://www.visceral.eu/benchmarks/ | public available | Register requested | 20 | Whole body |
| Neuron | BigNeuron dataset | 2016 | https://www.osti.gov/biblio/1337390-bigneuron-dataset | public available | Register not requested | unknown | Neuron |
| US | CETUS: Left Ventricle Segmentation in 3D Echocardiography Algorithm Evaluation Platform | 2014 | https://www.creatis.insa-lyon.fr/EvaluationPlatform/CETUS/index.html | public available | Register requested | 45 | cardiac |