scrna-trajectory <indir> <outdir> <h5ad> <gtf>

Run trajectory analysis with scVelo

positional arguments:
  indir                cellranger directory, including outs and outs/analysis
  outdir               output directory
  h5ad                 seurat object h5ad file
  gtf                  gene gtf file, which is located in ref_folder/genes/genes.gtf

options:
  -h, --help           show this help message and exit
  --genes [GENES ...]  gene list, seprate by space
  --mode MODE          stochastic or dynamical
  --start START        barcode for start cell