regulon analysis - WXlab-NJMU/scrna-recom GitHub Wiki
Tools: pySCENIC
scrna-regulon <infile> <outdir> <version> <tfs> <cisdb> <motif>
Run Egulatory Network Inference with pySCENIC
positional arguments:
infile input file
outdir output file
version genome version name
tfs genome transcript factor file
cisdb cisTarget databse
motif genome motif file
options:
-h, --help show this help message and exit
--minGenes MINGENES min gene counts for one cell
--maxGenes MAXGENES max gene counts for one cell
--minCells MINCELLS min cell counts for one gene
--maxMT MAXMT max percentage of mitochondrial