scrna-metabolism <infile> <outdir>

cell-wise metabolic estimation using scFEA

positional arguments:
  infile                Input seurat count matrix csv file
  outdir                output directory

options:
  -h, --help            show this help message and exit
  --refdir REFDIR       scFEA model directory
  --species SPECIES     human or mouse, default is human
  --moduleGene MODULEGENE
                        table contains genes for each module
  --stoichiometry STOICHIOMETRY
                        table contains relations between compounds and modules
  --cName CNAME         The name of compounds, 2 rows: compounds name and id
  --imputation IMPUTATION
                        Whether perform imputation for SC data, default is True