Installation: WHOI HPC - WHOIGit/ifcb_classifier GitHub Wiki
Installation and Setup on HPC
All installation commands are to be run from a terminal.
<user>
refers to your username (and password)
ssh <user>@poseidon.whoi.edu
cd $SCRATCH
git clone https://github.com/WHOIGit/ifcb_classifier.git ifcbnn
cd ifcbnn
-
conda create -n ifcbnn --file requirements/pkgs.hpc.txt
- If you get “conda: command not found”, the anaconda hpc Module may not be loaded. Do
module load anaconda
and try again. - You can ensure modules load when you login with
module initadd anaconda
- If you get “conda: command not found”, the anaconda hpc Module may not be loaded. Do
-
conda activate ifcbnn
- If you get prompted with "
conda init <SHELL_NAME>
" selectbash
for your shell-name. You will have to log out of poseidon (exit
), log back in, and navigate back to this DIR install directory.
- If you get prompted with "
pip install git+https://github.com/joefutrelle/pyifcb.git
- DONE! Your installation is ready to go. You can test that things were installed correctly by doing
python neuston_net.py --help
. The help screen/documentation should appear.