The convertNRRD.py script allows you to convert a NRRD file into an atlas. It does not search recursively for several NRRD files.

The script requires the following python packages:

• PIL
• pynrrd
• NumPy
• ndimage, misc from SciPy library

The script takes two input arguments. The <InputFile> containing the volume data .nrrd file and the <OutputFile> name where the atlas will be stored. In case the output path does not exists, it will be created.

python convertDICOM.py <InputFile> <OutputFileName>