Install

gem install bio-polyploid-tools

You need to have in your $PATH the following programs:

• MAFFT
• primer3
• exonerate
• blast

System dependencies

PolyMarker is developed and tested in MacOS and Linux systems. If you use windows, try using the Windows Subsystem for Linux. On ubuntu, the following commonly installed libraries:

sudo apt install zlib1g-dev
sudo apt install libncurses5-dev
sudo apt install libtinfo-dev 
sudo apt install exonerate  

Supperted Ruby versions

The code was originally developed on ruby 2.1, 2.3 and 2.5. Only officially supported ruby versions are mantained. It is only actively tested in currently supported ruby versions:

• 2.3.5
• 2.4.2
• 2.5.*
• 2.6.*

Web interface

If you want to install a local PolyMarker server, go to this repository.