Meeting 14.05.20 - TobiasSchmidtDE/DeepL-MedicalImaging GitHub Wiki

What happened so far

move models to gcp storage
set up chestX-Ray14 NIH (download, repackaging, rescaling, reformatting labels, hosting)
refactored setup scripts and code/notebooks for multiple datasets
- using .env to point to dataset directories
- improved documentation (general setup and datasets)
integrate and document keras generator
more documentation (see docker wiki entry)
WIP (almost done) state of the art architectures (guendel et al)
WIP (started) state of the art architectures (LEARNING TO DIAGNOSE FROM SCRATCH BY EXPLOITING DEPENDENCIES AMONG LABELS, Li Yao, Eri et al)
WIP (almost done) remote access to jupyter lab, jupyter notebook and tensorboard

Nico: find a radiologist
merging datasets:
- which pathologies are we interested in? All of them? Specific ones?
general feedback
- project progress
- documentation
- other?
Radiologie Vorlesung in person?
more datasets? see data set wiki entry

merging datasets
- Chexpert and chestX-Ray14 NIH
- rerun experiments with merged datasets
more preprocessing, try out stuff
reimplement generator for optional resizing
finish state of the art architectures
integrate remote access into docker build file