Resources - TheEvergreenStateCollege/bioinformatics GitHub Wiki

A Page for shared resources so they don't get lost on the Discord

RUST

Rust for C++ programmers

C memcpy equivalent

Rust Reference Counter

GRAPHS

Graph Theory Playlist //An excellent medium level overview of Graph Theory.

De Bruijn graph //The video in the series covering the De Bruijn Graph.

Euler got us the Covid vaccine: Graph theory and gene sequencing //Excellent example towards the end on what our work might look like conceptually.

Eulerian Path/Circuit algorithm (Hierholzer's algorithm) //Our solution should be a Eulerian walk/path, here's a good video describing what we'll need.

MATH

Adjacency matrix //Key to understand adjacency matrices for digraphs

Adjacency matrices for digraphs //De Bruijn Graphs are directed so we'll need to use adjacency matrices in this form.

RUST GPU OPTIONS

[Vulkan API Rust for compute] (https://kylemayes.github.io/vulkanalia/) //If decide to use Vulkan with native Rust support this seems like a solid tutorial.

An absolute beginners guide to WGPU

GPU Programming in Rust

master-thesis Rust GPU Programming

Rust CUDA

Hardware-Accelerated Rust Profiling

Safe rust wrapper around CUDA toolkit