Ellie Dev Diary 04‐09‐24 - TheEvergreenStateCollege/bioinformatics GitHub Wiki
humans here:
- Dee Dee
- Rain
- Taylor
- Dom
- Cassidy
- Ellie
- Gavin
Action Items:
- Read the paper
- watch math videos
Friday plans:
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first half of meeting is dedicated to asking rust questions
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last half of meeting is dedicated to reading the paper
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rust version of templatize is generic
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hashmap libraries get pretty easy parallelization in Rust
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wgpu vs Cuda?
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Suffix-tree is O(I)
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normal is O(n+m)
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people are definitely leaning towards suffix trees
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going forward we're using DNA
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levers to pull
- segmentation
- error percentage
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ecoli DNA and RNA
Week 6
- My foot has been in a lot of pain and I have an appoint next week to see one so I didn't get a whole ton done this week
- I've been working on creating a new edit-distance.rs program using dynamic programming, here's a few of the resources I've been looking through:
- https://www.youtube.com/watch?v=XYi2-LPrwm4
- https://medium.com/@ethannam/understanding-the-levenshtein-distance-equation-for-beginners-c4285a5604f0