Ellie Dev Diary 04‐09‐24 - TheEvergreenStateCollege/bioinformatics GitHub Wiki

humans here:

  • Dee Dee
  • Rain
  • Taylor
  • Dom
  • Cassidy
  • Ellie
  • Gavin

Action Items:

  • Read the paper
  • watch math videos

Friday plans:

  • first half of meeting is dedicated to asking rust questions

  • last half of meeting is dedicated to reading the paper

  • rust version of templatize is generic

  • hashmap libraries get pretty easy parallelization in Rust

  • wgpu vs Cuda?

  • Suffix-tree is O(I)

  • normal is O(n+m)

  • people are definitely leaning towards suffix trees

  • going forward we're using DNA

  • levers to pull

    • segmentation
    • error percentage
  • ecoli DNA and RNA

Week 6