2024‐08‐13 Tuesday Meeting Notes - TheEvergreenStateCollege/bioinformatics GitHub Wiki

2024-08-13 Tuesday Meeting

1pm ET / 10am PT

Dom, Rain, Paul attending.

Dom

Task 1: Rust Suffix Tree

Assignment of unique identifiers to suffix tree (subtrees?) to aid in managing our own memory, and offloading into database.

.gitignore for C++ artifacts (.obj)

Branch TBD, will commit and push.

Task 2: C++ abstractions for graphs

Branches for these tasks:

https://github.com/TheEvergreenStateCollege/smarty-plants/tree/cplants-init

Rain

Zoomable view with d3 zoom feature.

How to change maximum zoom out and zoom in?

400 nodes vs millions and millions of nodes.

Google Maps -like mini-map feature.

Like cache locality, we need to fetch a given node, and all the nodes around it.

Paul

https://github.com/TheEvergreenStateCollege/smarty-plants/pull/44